Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0585 ATGTATTCTTCTTTCTTTCTTTCTTTCTTTCCTTTTTTTTTTCCCTCTCAAAATACGCAGGCTATTACAGCCCTTAAGAAAGGGACATATCTGCTGAAGTATGGGCGCAGGGGGAAGCCGACGTTCTGCCCATTCCGCATTTCTAATGATGAGAAAGTGTTATTATGGTATGCTGGCAGAGAGGAGAAACAGCTTCAACTATGCCAAGTGTCGAGGATAATACAGGGACAGCATACTGCAACATTTCGACAATATCCTCGGCTTGAAAAGGAAGATCAATCATTTTCTCTTATGTACAAAGACGGGTCCTTGGATATTATATGTAAGGACAAGGATGAAGCTGAAGTCTGGTTTGTTGCCCTTAGAGCATTGATTTCGCAATGCAACTATCACAATTGGATAAATGAAACAAGGAGTGACTCTGGATCATTAGATCATCATACTGATATAAGAAGAAACACTCCATTGACTGTGTCAGCTAACAGCAGTGACATAATCTCCAAGGGAGAAGCAATTAGTGATGCATTAGTCAGTAGGGGAGTATGTAGAGTTGGAAGTTCATCTTTTGCCAGAAGAAATGCACGTTTACCGAAAGCATTGGAATCAACAGTGATGCTTGATGCACAAAATATCGCTTGTGGCAGTAAGCATGCGGTGTTAGTCACAAAACAAGGAGCAATCTTTAGCTGGGGTGAGGGATATGGTGGCAGGCTCGGGCATGGAGTAGAAGCTGATGTTTCCCAACCAAAACTTATTGATGCTCTCAGTGGATTAAACATTGAATTAGTAGCATGTGGAGAGTACCATACCTGTGCTGTAACCCTGTCTGGGGATCTTTATACGTGGGGTGATGGTATTTACAATTTTGGTCTTCTTGGGCATGGCTGCGGAATCAGTCACTGGACCCCAAGAAAGGTAAGTTGTCAGATAGAGGGCATGCATGTCTCATCTATCTCTTGTGGACCTTGGCATACCGCTGCTGTAACATCAGCAGGTCAGTTGTTCACATTTGGAGATGGAACTTTTGGTGCCCTAGGCCATGGAGATCGTAATAGCTCAGGCACTCCTAGAGAAGTGGAAACTTTAAAAGGACTACGGACAATAAGGGCATCCTGTGGTATTTGGCACACTGCTGCAGTTGTTGAAATTACCACAGAACCTTCTATTAGTTCTTCAGCTGGTAAGTTGTTCACCTGGGGGGATGGAGATAAAGGCCAACTTGGCCATAGGGATAAAGAGCCTAGACTAGCTCCTTCTTGTGTAACAATATTAGATGACATGACTTTTTGTCAAGTAGCCTGTGGCCATAGCATTACAGCTGCTCTTACAGATTCAGGACAAGTATACACAATGGGGAGTGTTGAATATGGGCAACTTGGGAGTCCGCAAAGTGCTGATGGACTTCCTTCTTGCACTGAAGCTTTTTGCAAAGCATGCAGCAGTAGAAAATCTCTTAAAGCCTCTTTGGCTCCAAATATGAATAAACCTTATCGTGTGTGTGATGATTGCTTCACTAAACTAAAGAAGGCCTTGGAATTTGGATTTTTCCCATTGCCAAGAGTTGCAAGTGGAATTAAAATTCATAATCTTAATGAGGTAGCTGAGAAGGAGTCTTTGGATTCCAGACCACATGGCCGACTTCCCAGGCTCACCTCATTTGGTTCTTTCAAACAGGCTGAAAATCAACATTTCAAGCCCAACTTAAAGCTAGAATTAAACAATGGTCATGTTCCCACTCTAAATGGAAGTTTCCAATGGGAAGGCTTTTGCACGTCAAATACATCAACTTCTGTGTTTGGGTCTTCACAGAAAGCATCTGCTTCTGTTCCTGGTTCCAGAATAGTTTCACGAGCAACCTCTCCTGGTTCAAGCATGGTTTCTCGAGCAACCTCTCCTGTCTCAAGAAACTCAACCTCATCTTATTCCATGACACTGGCATTGGATCGTATTGCTCGTTCAAATCTGGAAGTCAGCCTTGATCATTCTAAGCAAACAAACGACAGCCTCCTCCAAGAAATAATATTGTTAAGGGCACAGTTTTCCATTGTGTCACAAGAACAACAAGCTTGTTATTAA 2076 0.4273 MYSSFFLSFFPFFFPSQNTQAITALKKGTYLLKYGRRGKPTFCPFRISNDEKVLLWYAGREEKQLQLCQVSRIIQGQHTATFRQYPRLEKEDQSFSLMYKDGSLDIICKDKDEAEVWFVALRALISQCNYHNWINETRSDSGSLDHHTDIRRNTPLTVSANSSDIISKGEAISDALVSRGVCRVGSSSFARRNARLPKALESTVMLDAQNIACGSKHAVLVTKQGAIFSWGEGYGGRLGHGVEADVSQPKLIDALSGLNIELVACGEYHTCAVTLSGDLYTWGDGIYNFGLLGHGCGISHWTPRKVSCQIEGMHVSSISCGPWHTAAVTSAGQLFTFGDGTFGALGHGDRNSSGTPREVETLKGLRTIRASCGIWHTAAVVEITTEPSISSSAGKLFTWGDGDKGQLGHRDKEPRLAPSCVTILDDMTFCQVACGHSITAALTDSGQVYTMGSVEYGQLGSPQSADGLPSCTEAFCKACSSRKSLKASLAPNMNKPYRVCDDCFTKLKKALEFGFFPLPRVASGIKIHNLNEVAEKESLDSRPHGRLPRLTSFGSFKQAENQHFKPNLKLELNNGHVPTLNGSFQWEGFCTSNTSTSVFGSSQKASASVPGSRIVSRATSPGSSMVSRATSPVSRNSTSSYSMTLALDRIARSNLEVSLDHSKQTNDSLLQEIILLRAQFSIVSQEQQACY* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0585 691 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 318 328 IPR000408 -
Vvi17g0585 691 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 469 - -
Vvi17g0585 691 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 211 221 IPR000408 -
Vvi17g0585 691 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 276 IPR000408 -
Vvi17g0585 691 Pfam Regulator of chromosome condensation (RCC1) repeat 394 442 IPR000408 -
Vvi17g0585 691 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Vvi17g0585 691 Pfam Regulator of chromosome condensation (RCC1) repeat 225 273 IPR000408 -
Vvi17g0585 691 Pfam Regulator of chromosome condensation (RCC1) repeat 276 328 IPR000408 -
Vvi17g0585 691 MobiDBLite consensus disorder prediction 610 635 - -
Vvi17g0585 691 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 445 IPR000408 -
Vvi17g0585 691 Gene3D - 137 287 IPR009091 -
Vvi17g0585 691 Gene3D - 288 465 IPR009091 -
Vvi17g0585 691 SUPERFAMILY PH domain-like 19 125 - -
Vvi17g0585 691 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 331 IPR000408 -
Vvi17g0585 691 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Vvi17g0585 691 SUPERFAMILY FYVE/PHD zinc finger 470 514 IPR011011 -
Vvi17g0585 691 PRINTS Chromosome condensation regulator RCC1 signature 435 453 IPR000408 -
Vvi17g0585 691 PRINTS Chromosome condensation regulator RCC1 signature 277 293 IPR000408 -
Vvi17g0585 691 PRINTS Chromosome condensation regulator RCC1 signature 334 348 IPR000408 -
Vvi17g0585 691 PRINTS Chromosome condensation regulator RCC1 signature 208 221 IPR000408 -
Vvi17g0585 691 PRINTS Chromosome condensation regulator RCC1 signature 227 243 IPR000408 -
Vvi17g0585 691 PRINTS Chromosome condensation regulator RCC1 signature 318 334 IPR000408 -
Vvi17g0585 691 FunFam PH, RCC1 and FYVE domains-containing protein 1 151 385 - -
Vvi17g0585 691 SUPERFAMILY RCC1/BLIP-II 207 466 IPR009091 -
Vvi17g0585 691 CDD PH_PLC_plant-like 20 126 - -
Vvi17g0585 691 Gene3D - 16 132 IPR011993 -
Vvi17g0585 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 513 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0585 Vvi-Chr17 6515084 6546950 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0585 - - vvi:100243300 628.632