LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0581	ATGGAAGAGATTCAATCTCTCCCATCGCTCTCAAGCCTCTCAGCCTCCACAGTTTCCTTCCTCAACAAGGAATTCCACAGGAAAGAAGATCTGATTCGCGCAACACACCTCGTCTCTGAGTTGCAGAAGCGGTGCGGCGATTTGGACCAAAACCTAATTGATCTCAATCGCACACTCGAAGCCACCCTTCTTGCTTATGCTTTCCATTCCAATGGACTGCACGACCTCTTTCGCAATATTAATCTCCAATTGACTCGTCTCAACTCGACCACTTGCTTTTCATCAGATGGTGGAGGAGGAGAGGGCAGGGCGGGACAGTTATTGGCGGAGGAGTTGCCGGCGCTTGCCAAAGAAGTGGCTCGGGTTGAGACCGTTCGTATGTACGCAGAGACAGCATTAAAACTTGACAGTTTGGTTGGTGACATCGAAGATGCTGTATCTTCTACTATGAACAGAAATCTAAAGAAGCATGCTTCCACACACAGTTCAGAAGAAATGCGTTTGCACGCCCTTAAAGCGCTTAAATTGACAGAAGATGTTTTAACTTCAGTCACAAAAACACGCCCTCAGTGGGCACGTCTTGTGTCAGCTGTTGATCAAAGAGTAGATCGAGCTTTAGCCATTTTAAGACCTCAGGCAATTGCAGATCATCGGACCCTTCTTGCTTCTCTTGGATGGCCACCGCCTCTGTCCACTTTAAACTCAAACTTAGATACAAGAAAATCTAGTGAAGTCTTAAATCCTCTTTTTACGATGCAAGGGGACCTCAAACACCAGTACTGTGAAAATTTCCTTTCCTTGTGTAGCCTGCAGGAATTGCAGAGAAGAAGAAAATATAGGCAACTTGAGGGGTATTATCGGGAAATTGCTCTTCACCAGCCACTCTGGGTGATTGAAGAGCTTGTGAATCCTATATCATTGGCATTCCAGCGACATTTTTCAAAGTGGATTGATAAACCTGAATTCATTTTTGCCCTTGTATATAAGGTTACCAGGGACTATGTTGACTCCATGGATGAGTTATTGCAACCATTGGTTGATGAAGCAATGCTAGCAGGTTACAGTTGTAGAGAAGAATGGATTTCAGCGATGGTAACCTCCCTAGTAATCTACTTGGCAAAAGAGATATTCCCCAGTTATGTTGGTCAACTGGATGAAGAGAGTGTCACTGGTGTTCAATCCCAGGCTAGAATAGCATGGCTCCATCTTGTTGACTTGATGATCACTTTTGATAAACGGGTTCAGTCCATGTTAGCACATTCTGGATTGTTGGTTTTCCTTCAAGAAGATGGGAATCTGCAGAAGATTTCTTCTTTGTCCGTCTTCTGTGATCGGCCCGACTGGCTTGATTTATGGGCAAAAATAGAGCTTGATGATGTGCTAGATAAGTTGAAACTTGAGATGGAGGATAGGAAAAATTGGACAATGAAAGTTCAGGGAGCAGTTCTTCTGCCAGGTCCTGAAGATTACAGATCTCCTGCAATTTCTAGTGTTTTTCTTCAGCGCTTGTCAGCTGTGGTTGATAGGTGTCGAGCATTGCCAAGCGTTTCTTTGAGTTCAAGGTTTGCCAGATTGTCTGGTGCACCCATCATACATAAATTTTTGGATTGCATACTTCTAAGGTGCCAAGAAGCTGAAGGCCTGACTGCCCTTACAGATGATGATGCTCTTATCAAAGTTACAAACTCCATAAATGCTGCTCGTTACTTTGAGTCTGTTTTGAAGGAATGGTGTGAGGATGTCTTCTTTCTTGAGATGGGATTACATGAAGGTGATCAGTTGGGAACGGTGGTTGGTGTGAATAGTTTTAGTAGACCAATTGAAGGACCTGGGAGCGGTATTTTTGATGACGAAATTGAAAAGCTGGAGAAGTTCAGATTGGAGTGGGTTGGGAAGTTATCAGTTGTTCTCTCAAGGGGATTTGATGCTCGGTGTCGAGATTACATGAAGAACAGGAAGCAGTGGCAGGAAAAGGTTGAAGAAGGTTGGATGGTGTCCAAGTCTTTACTGGGGGCTCTGGATTATTTGCAAGGAAAAATGTCAATACTGGAAGGAAGTTTGAATGCAATAGACTTTGTTGGGGTTTGGAGAAGTTTGGCAGCTCATGTGGATCGATTAATTTTTAGTGGCATTCTTATGAGCAATGTAAAATTTTATGATGGGGGTGTAGAGAGATTTAGATGCGATTTGGAGGTTCTTTTCGGGGTATTCAGGGCTTGGTGTATGAGGCCTGAAGGCTTCTTTCCCAAAGCGAGTGAGGGCTTGAAGTTGTTGAAGATGGGTGAGGACCAACTCCAGGATTATTCAGCAGCAGGGGAGAAATGGATGGTGGAAAATGGGATTAGGCATTTGAGTGTTGCAGAAGCGGAAAAGATTGTAAAGAATAGAGTATTTACAAGTTGA	2403	0.4378	MEEIQSLPSLSSLSASTVSFLNKEFHRKEDLIRATHLVSELQKRCGDLDQNLIDLNRTLEATLLAYAFHSNGLHDLFRNINLQLTRLNSTTCFSSDGGGGEGRAGQLLAEELPALAKEVARVETVRMYAETALKLDSLVGDIEDAVSSTMNRNLKKHASTHSSEEMRLHALKALKLTEDVLTSVTKTRPQWARLVSAVDQRVDRALAILRPQAIADHRTLLASLGWPPPLSTLNSNLDTRKSSEVLNPLFTMQGDLKHQYCENFLSLCSLQELQRRRKYRQLEGYYREIALHQPLWVIEELVNPISLAFQRHFSKWIDKPEFIFALVYKVTRDYVDSMDELLQPLVDEAMLAGYSCREEWISAMVTSLVIYLAKEIFPSYVGQLDEESVTGVQSQARIAWLHLVDLMITFDKRVQSMLAHSGLLVFLQEDGNLQKISSLSVFCDRPDWLDLWAKIELDDVLDKLKLEMEDRKNWTMKVQGAVLLPGPEDYRSPAISSVFLQRLSAVVDRCRALPSVSLSSRFARLSGAPIIHKFLDCILLRCQEAEGLTALTDDDALIKVTNSINAARYFESVLKEWCEDVFFLEMGLHEGDQLGTVVGVNSFSRPIEGPGSGIFDDEIEKLEKFRLEWVGKLSVVLSRGFDARCRDYMKNRKQWQEKVEEGWMVSKSLLGALDYLQGKMSILEGSLNAIDFVGVWRSLAAHVDRLIFSGILMSNVKFYDGGVERFRCDLEVLFGVFRAWCMRPEGFFPKASEGLKLLKMGEDQLQDYSAAGEKWMVENGIRHLSVAEAEKIVKNRVFTS*	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0581	800	PANTHER	RAD50-INTERACTING PROTEIN 1 RINT-1	3	797	IPR007528	GO:0006888\|GO:0006890\|GO:0070939
	Vvi17g0581	800	Gene3D	Dsl1p vesicle tethering complex, Tip20p subunit, domain D	614	738	IPR042044	-
	Vvi17g0581	800	FunFam	RINT1-like protein MAG2	614	738	-	-
	Vvi17g0581	800	Coils	Coil	38	58	-	-
	Vvi17g0581	800	ProSiteProfiles	RINT1/TIP20 domain profile.	205	800	IPR007528	GO:0006888\|GO:0006890\|GO:0070939
	Vvi17g0581	800	Pfam	RINT-1 / TIP-1 family	296	795	IPR007528	GO:0006888\|GO:0006890\|GO:0070939

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0581	Vvi-Chr17	6471884	6479159	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0581	K20474		-	vvi:100263828	1553.5