Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0579 ATGTTGGAGGGTCCTTCATATTTGATCTCAAGGGATTTGCCAAATGCCTGCGAACAAGAGAGCAAATGGATTTACAATACTTTCCTTGTTATTGAACTCTCAAATAGTAAACGCCCATTAGAAGATGGAGAAGACGTTGGGTTGAGAAAGTTTTCCAAGCCATCAGATGGCCATGAGACCGAGGAAACAATGCAGGGTTTACATGATCTTTCACTTTCTCAAGCCAACCAATCTAATACCCATCATGATACCGGGGATCAGTCAGATTTGAGTTCACTCATTAGCCAAATTGGCCGAGACAATTCTATTAATTGTCTCCTTCAGTGCTCAAGGTCTGATTATGGCTCAATTGCATCACTTAATCGGAGCTTCCGCTCTCTAATTCGTGGTGGGGAACTCTATAGACTGAGACGAAAATTGGGTATTGTTGAACATTGGGTTTATTTTTCCTGCGATCTTCTTCAGTGGGAGGCCTTTGATCCAATCCGCCGCCGATGGATGCATTTGCCTAGAATGCCTTCATATGAATGCTTCATGTGTTCAGATAAAGAATCATTGGCTGTTGGTACAGAGCTTCTTGTCTTTGGAAAGGAAGTTACGTCTCATGTTGTTTACAAATACAGCATTTTGACTAACTCATGGTCGTCGGGCATGAATATGAACAGCCCCAGGTGCTTGTTTGGGTCGGCTAGTCTTGGGGAAATTGCTATTCTAGCCGGTGGTTGTGATCCAAGGGGTAATATATTGAGCTCAGCAGAGCTTTATAATTCAGATACTGGAACTTGGGTGACTCTGCCTAGCATGAATAAGCCCAGGAAAATGTGTTCTGGGATCTTTATGGATAGAAAGTTTTATGTTATTGGGGGAATTGGGGTAGGAAATTCAAACTCGCTTACATGTGGAGAGGTTTATGATTTGGAGATGCGGACTTGGCGTGAGATTCCTAACATGTTTCCAGGACGAAATGGCTCAGCTGGGGTGGCCGAGGCAACACCTGCTGCAGCAGAGGCACCTCCTCTTGTTGCAGTTGTAAATAATGAGCTGTATGCAGCTGACTATGCAGAGAAGGAGGTGAGGAAATACGACAAGGCGAGGAACTTGTGGGTCACAGTTGGCAGATTGCCTGAGCAAGCTGTTTCGATGAATGGTTGGGGGCTAGCATTTAGGGCATGCGGAGATCGGCTTATTGTTATTGGGGGACCCAGGGTTTTAGGTGGAGGGATTATAGAGCTTAATTCTTGGAGTCCAGGTGAAGGCCCGCCTCAATGGGACCTGCTTGCTAGGAAGCAGTCAGGCAGCTTTGTCTATAATTGTGCTGTAATGGGATGTTAA 1332 0.4512 MLEGPSYLISRDLPNACEQESKWIYNTFLVIELSNSKRPLEDGEDVGLRKFSKPSDGHETEETMQGLHDLSLSQANQSNTHHDTGDQSDLSSLISQIGRDNSINCLLQCSRSDYGSIASLNRSFRSLIRGGELYRLRRKLGIVEHWVYFSCDLLQWEAFDPIRRRWMHLPRMPSYECFMCSDKESLAVGTELLVFGKEVTSHVVYKYSILTNSWSSGMNMNSPRCLFGSASLGEIAILAGGCDPRGNILSSAELYNSDTGTWVTLPSMNKPRKMCSGIFMDRKFYVIGGIGVGNSNSLTCGEVYDLEMRTWREIPNMFPGRNGSAGVAEATPAAAEAPPLVAVVNNELYAADYAEKEVRKYDKARNLWVTVGRLPEQAVSMNGWGLAFRACGDRLIVIGGPRVLGGGIIELNSWSPGEGPPQWDLLARKQSGSFVYNCAVMGC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0579 443 MobiDBLite consensus disorder prediction 39 65 - -
Vvi17g0579 443 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 82 443 - -
Vvi17g0579 443 Pfam Kelch motif 223 269 IPR006652 GO:0005515
Vvi17g0579 443 Pfam Kelch motif 271 317 IPR006652 GO:0005515
Vvi17g0579 443 SMART kelc_smart 235 282 IPR006652 GO:0005515
Vvi17g0579 443 SMART kelc_smart 191 234 IPR006652 GO:0005515
Vvi17g0579 443 SMART kelc_smart 283 331 IPR006652 GO:0005515
Vvi17g0579 443 FunFam F-box/kelch-repeat protein SKIP11 139 428 - -
Vvi17g0579 443 SUPERFAMILY Kelch motif 153 434 IPR015915 GO:0005515
Vvi17g0579 443 Gene3D - 138 424 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0579 Vvi-Chr17 6467984 6469315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0579 100 316 Miscellaneous Gene Families AT4G33900 26.027 8.51e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0579 - - vvi:100243204 893.264