Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0575 ATGGTGCTGGTGTTGGCCTTAGGGGATCTTCATATCCCTGATAGGGCTCCTGATTTGCCGCCAAAGTTCAAATCCATGCTTGTTCCTGGCAAGATCCAACACATCATTTGCACTGGGAATTTGTGTATCAAAGAGGTTCATGATTACTTGAAAACCCTTTGTCCTGACATGCATATTACCCGAGGTGAATATGATGAGGAGACACGTTACCCAGAGACCAAAACACTTACCATTGGTCAATTCAAGCTTGGACTATGCCATGGTCATCAGGTTATTCCATGGGGGGACTTAGACTCACTAGCCATGCTCCAGAGGCAGTTGGATGTAGACATCCTTGTGACAGGTCATACCCATCGATTCACAGCTTACAAACATGAGGGTGGCGTTGTTATTAACCCGGGTTCTGCCACTGGTGCCTTCAGCAGCATCACCTATGATGTTAATCCTAGTTTCGTTCTCATGGACATCGATGGTCTGCGTGTTGTCGTCTACGTCTATGAACTCATAGATGGGGAGGTTAAGGTTGACAAGATTGATTTTAAGAAAACAGCAGCCACAACTCGCTCTACTCAATGA 576 0.4583 MVLVLALGDLHIPDRAPDLPPKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTLCPDMHITRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHRFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTAATTRSTQ* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0575 191 PANTHER VACUOLAR SORTING PROTEIN VPS29 1 184 IPR000979 -
Vvi17g0575 191 Pfam Calcineurin-like phosphoesterase superfamily domain 4 157 IPR024654 -
Vvi17g0575 191 FunFam Vacuolar protein sorting-associated protein 29 1 182 - -
Vvi17g0575 191 CDD MPP_Vps29 3 180 IPR028661 GO:0030904|GO:0042147
Vvi17g0575 191 Gene3D - 1 182 IPR029052 -
Vvi17g0575 191 NCBIfam YfcE family phosphodiesterase 3 158 IPR000979 -
Vvi17g0575 191 SUPERFAMILY Metallo-dependent phosphatases 1 181 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0575 Vvi-Chr17 6419940 6423613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0575 K18467 - vvi:100854697 394.43