Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0572 ATGGAACGCTATCTCATAGATTTACTTCACTGCTCTCTGCCCATAAACCAGTTGAAGCAAATCCAAGCTCTCATCATCATAAAGTACCTCTCTCTCACCCCACTTTTTATTAGAAGGCTATTGAACGCGTCCTTTATCCAATATGCTCGCCAAGTGTTTGATCAAATTCCTCACCCAGATCAAGGCGTTCATTGTTCTTTCATTACTGCCTACTCTAGACTTTCCTTGAACAATGAAGCTCTAAGAACATTCGTTTCGATGCACCAAAACAATGTCCGGATAGTTTGTTTCACAATTCCGCCCATTTTTAAGTCATGTGCTTCGTTGTTGGCTATTGATGTGGGAAAACAGGTTCATTCGTTGGTTATACGTTATGGGTTCCACTCAAGTGTGTTTTGTCAGAATGCTTTAATTAATTTCTATGCTAAAATTAATGACTTGGGTTCTGCTGAATTGATTTTCGATGGGATTTTGGTGAAGGACACGATTGCTTATAATTGTTTGATTTCTGCTTATTCAAGATCTGGTGAGGTTTTAGCGGCTCGAGAACTTTTTGATAAGATGAGAGATAGGAGTATTGTTTCATGGAATGCTATGATCTCTTGCTATGCTCAGAATGGGGATTATCATAAAGGGTGGATAATTTTCCAAAGAATGCAGGATGAAATGTGTGAGCCCAATGAAATTACTTTGGCCACTGTACTCTCTATTTGTGCTAAACTTGGGGATTTGGAGATGGGTTTGAGGATTAAGAAGCTTAATGACAATAAAAATCTGGGTTCAAATATGATTGTTTCAACTGCGATGTTGGAAATGTATGTCAAATGCGGGGCTGTTGATGATGGGCGTCTAGTATTTGACCATATGGCCAGAAGGGATGTTGTTACATGGAGTGCCATGATTGCAGGTTATGCCCAAAATGGGAGATCAAATGAGGCCTTAGAGCTTTTTGAAAACATGAAAAGTGCACAAATTAAACCTAATGATGTTACACTTGTTAGTGTTCTATCAGCTTGTGCTCAGTTGGGTTCAGTAGAAACTGGTGAACGCATTGGAAGTTATGTGGAGAGTCGAGGCTTAATTTCAAATGTTTATGTTGCCTCAGCGCTACTGGGTATGTATTCTAAGTGTGGAAATATTATAAAGGCTCGCCAAATATTTGATAAGCTGCCTCAAAGAGATAATGTTACTTGGAACTCAATGATTATGGGGCTAGCTATTAATGGTTTTGCGGAGGATGCAATTGCTCTTTACAACAGAATGAAAGAAATTGAGGTGAAACCGAATAACATAACATTTGTAGGACTAATGACAGCCTGCACCCATGCAGGTCATGTTGAACTGGGTCTTGAGTTTTTCAGAAGTATGAGGTCAGATCACAACATTTCACCAAATATTGAACATTTTGCTTGTATTGTGGACCTCTTTTGTAGATCAGGAAGACTAATAGATGCCTATGAGTTTATATGTAGGATGGAAGTGGAGCCCAATGTTGTAATATGGGGCACATTGTTGAGTGCATCCAGGATCCACTTGAATGTAGAGCTTGCTGAGCTTGCAGGGAAGAAATTACTAGAACTAGAGCCCGATAACTCTGGGAACTATGTCATTCTTTCTAACATATATGCCAGTGCCGGCAGATGGCAAGAAGCACTGAAGGTGCGGAAGTTGATGAAAGATAAGAGGGTGCAGAAAGCAGCTGCGTATAGTTGGGTAGAAGTGGAGGATAGGGTGCATAAATTTTTAGTCGGTGACACATCCCACCCTAGATCTGATGAGGTTTATAGCACCATTGATGGTTTGGCATTGCTTTCGACTTGGGTTGGTTATGAGTTGGATTTTGAAATAGAGGCCTGA 1857 0.4017 MERYLIDLLHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTIDGLALLSTWVGYELDFEIEA* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0572 618 Gene3D Tetratricopeptide repeat domain 28 147 IPR011990 GO:0005515
Vvi17g0572 618 Pfam PPR repeat 368 393 IPR002885 -
Vvi17g0572 618 Pfam PPR repeat 471 493 IPR002885 -
Vvi17g0572 618 FunFam Pentatricopeptide repeat-containing protein mitochondrial 351 452 - -
Vvi17g0572 618 FunFam Pentatricopeptide repeat-containing protein mitochondrial 246 350 - -
Vvi17g0572 618 SUPERFAMILY TPR-like 181 554 IPR011990 GO:0005515
Vvi17g0572 618 Pfam PPR repeat 161 189 IPR002885 -
Vvi17g0572 618 Gene3D Tetratricopeptide repeat domain 155 256 IPR011990 GO:0005515
Vvi17g0572 618 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 348 602 IPR046960 GO:0003723|GO:0009451
Vvi17g0572 618 FunFam Pentatricopeptide repeat-containing protein At3g49710 104 245 - -
Vvi17g0572 618 FunFam Pentatricopeptide repeat-containing protein 453 593 - -
Vvi17g0572 618 Gene3D Tetratricopeptide repeat domain 366 578 IPR011990 GO:0005515
Vvi17g0572 618 Gene3D Tetratricopeptide repeat domain 257 359 IPR011990 GO:0005515
Vvi17g0572 618 Pfam PPR repeat family 292 340 IPR002885 -
Vvi17g0572 618 Pfam PPR repeat family 394 440 IPR002885 -
Vvi17g0572 618 Pfam PPR repeat family 192 240 IPR002885 -
Vvi17g0572 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Vvi17g0572 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Vvi17g0572 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Vvi17g0572 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vvi17g0572 618 Pfam E motif 511 573 IPR046848 -
Vvi17g0572 618 NCBIfam pentatricopeptide repeat 295 328 IPR002885 -
Vvi17g0572 618 NCBIfam pentatricopeptide repeat 164 194 IPR002885 -
Vvi17g0572 618 NCBIfam pentatricopeptide repeat 396 429 IPR002885 -
Vvi17g0572 618 NCBIfam pentatricopeptide repeat 431 465 IPR002885 -
Vvi17g0572 618 NCBIfam pentatricopeptide repeat 194 228 IPR002885 -
Vvi17g0572 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0572 Vvi-Chr17 6388980 6390836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0572 31 616 Glycoside Hydrolase AT3G49170 34.354 6.08e-121 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0572 - - vvi:100262058 1212.59