Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0571 ATGGATTTGCAGAGAGGATTGCCACTGCTAATCCAACAATTCGGTGCACTGTTCAAGAAGAATTTCCTTCTCTCATGGCGGAACAAGGGGGCGACGTTTCTTCAACTCTTCTCGTCTCTCTTCTTCATATTCCTCATCTTCTGTATCGGGAAAGCCATTCGTTCTCGGTTCTCCTCTTCTACAGAGTATGAAAACGTCTTTGATCCTAAGCCTCTGGTCTCTCTTCCGATTCCTCCTTGCGAGGATAAATTCTACACAAAGCTTCCTTGCTTCGACTTTGTTTGGAGCGGTAATGGAAGCGCTAAGATCCAGTCTATTGTCAATAGAATCATGACCAATAATCCTGGCCGCCCAATTCCTTCCGATAAGGTCAAATCATTTAGTACACGTGATGAAGTGGATGCATGGCTATATAGTGATCCAATGCGTTGCCCAGGAGCGCTGCATTTTGTAGAAACAAATGCTACTGTAATTAGCTATGGCTTACAAACTAATTCTACTCCAGTTAGTAAACGAGGGCATTATGAAGATCCCACATTCAAATTTCAAATTCCACTCCAAATTGTTGCAGAACGTGAAATGGCTAGGTCTCTAATTGGAGATCCAAACTTCAACTGGACTGCTAGATTTAAGGAATTTGCACACCCTGCAATAGAAGAGTTCTCTGTTGTGGCTGTAGTAGGTCCAACATTTTTCCTTGCAATTGCCATGTTTGGTTTTGTTATCCAAATTAGTTCCTTGATCACAGAGAAGGAACTAAAACTTCGCCAGGCAATGACAATGATGGGTCTTTATGATTCTGCCTACTGGTTGTCATGGCTCACATGGGAGGGAATTATCATACTTATTGCTTCACTTTTCATTGTTCTCTTTGGAATGATGTTCCAGTTTGATTTTTTCTTAAACAACAGTTTTTCAGTTGTATTCCTCTTGTTCTTCCTTTTCCAACTCAATATGATTGGTTATGCTTTCATGCTGTCATCCTTCATAAGCAAGTCATCTTCATCTACAATTATTGGTTTTTGCATTTTTATCTTCGGATTTTTTTCACAGCTTGTTACAATATTTGGATTTCCCTATAGTAACAACTTTCCTAATTTCTATCGGATTATATGGTCACTATTCCCTCCTAATCTTCTTGCTGAAGCTCTATCATTGCTTGCTGATGCAACTTCCACTCCTCAAGATCCTGGGATTAGCTGGAGTAAACGAGCAGACTGTGCACCAAATGATTTGGATTGTGTCATTACAATTAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAATCTCTATTTTACTTTTTGAAGCCTGGGTATTGGACAGGAAGAGGTGGAAACAAGGTGGAAGAGGGTGGCATTTGTAGTTGCATAGGTTCTATTCCATCTTTGGAGGACATCACTCCAGATGATGAAGATGTCCTTGAAGAGGAAAACAAAGTAAAACAACAAAGAAGGGAAGGTGTAGCTGATCCAAATATTGCAGTTCAGATATGCGGTCTTGCAAAAACATATCCTGGGACAACTAATATTGGTTGCTGTAAATGCAAGAAGACTTCGCCTTACCATGCTCTCAAGGGATTATGGGTGAACTTTCCAAAGAATCAACTATTTTGTCTCCTTGGACCCAATGGAGCTGGAAAAACTACTACAATTAATTGCTTGACTGGAATTACCCCAGTCACTGAGGGTGATGCATTAATATATGGATATTCCATTCGAAGCTCTGTAGGAATGTCAAACATTCGAAGAATCATAGGAGTTTGTCCCCAGTTTGACATTCTCTGGAATTCTTTGTCTGGTCAAGAGCACCTAGAGCTGTTCTCTAGCATTAAAGGCCTCCCCCCTTCTTCAGTCAAATCAGTTGCTCAAAAATCATTGGCAGAGGTGAAACTCACCCAAGCAGCCAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGACAACTGGCATGGACCCGATAACGAGGAGGCATGTGTGGGACATAATAGAGAATGCAAAGAAAGGACGTGCCATTGTCCTAACTACACACTCAATGGAAGAAGCGGACATATTAAGTGACCGCATTGGAATCATGGCAAAGGGTAGGCTTCGTTGCATTGGGACCTCAATTAGGTTGAAGTCTCGGTTTGGAACTGGTTTTATTGCTCATGTAAGCTTCACTGGAAGCACGAATGGAAACACTCGCCCCAATGACGATGCAGTCACCACACCTTATCATGAGGCCGTAAAGCAATTCTTTAAATATCATTTGGATATAGTGCCCAAAGAAGAGAACAAGGCCTTCTTGACTTTTGTCATTCCCCATGATCGAGAAGCACGGTTGACGAAATTCTTTGGGGAGCTCCAAGATAGAGAAACAGAATTTGGAATAGCAGACATTCAACTGGGGCTTACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAGAAGGCAGAGCTAGAAAGTGCCGCAGCTGAAGGGAGCATGGAATCTCTGACTTTAACATCCGGCATAGTGGTTCAGGTACCTGTGGGAGCCAGATTTGTGGGAATTCCAGGAACAGAGTCTGCAGAGAATCCCAGAGGAGTTATGGTAGAAGTACAATGGGAACAAGATGATACTGGTTCGCTCTGCATTTCCGAGCACTCGCCTGAGACTCCAGTACCTCCTGGCATCCCACAGATGCCTTCTTTGCGTAGAAGGTCAAGGACTGTTCAAGGGGTCGTGATTGACCCAAATCAAATTGTTTCAAATGATGATCGATGA 2877 0.4202 MDLQRGLPLLIQQFGALFKKNFLLSWRNKGATFLQLFSSLFFIFLIFCIGKAIRSRFSSSTEYENVFDPKPLVSLPIPPCEDKFYTKLPCFDFVWSGNGSAKIQSIVNRIMTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVSKRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPTFFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVLFGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFSQLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPNDLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKVEEGGICSCIGSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTTNIGCCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDALIYGYSIRSSVGMSNIRRIIGVCPQFDILWNSLSGQEHLELFSSIKGLPPSSVKSVAQKSLAEVKLTQAAKMRAGSYSGGMKRRLSVAIALIGDPKLVIMDEPTTGMDPITRRHVWDIIENAKKGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIAHVSFTGSTNGNTRPNDDAVTTPYHEAVKQFFKYHLDIVPKEENKAFLTFVIPHDREARLTKFFGELQDRETEFGIADIQLGLTTLEEVFLNIAKKAELESAAAEGSMESLTLTSGIVVQVPVGARFVGIPGTESAENPRGVMVEVQWEQDDTGSLCISEHSPETPVPPGIPQMPSLRRRSRTVQGVVIDPNQIVSNDDR* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0571 958 Pfam ABC transporter 547 691 IPR003439 GO:0005524
Vvi17g0571 958 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 762 IPR003439 GO:0005524
Vvi17g0571 958 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 492 858 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vvi17g0571 958 SMART AAA_5 555 739 IPR003593 GO:0016887
Vvi17g0571 958 Gene3D - 517 760 IPR027417 -
Vvi17g0571 958 MobiDBLite consensus disorder prediction 917 940 - -
Vvi17g0571 958 CDD ABC_subfamily_A 517 750 - -
Vvi17g0571 958 FunFam ABC transporter A family member 2 507 770 - -
Vvi17g0571 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 541 744 IPR027417 -
Vvi17g0571 958 ProSitePatterns ABC transporters family signature. 664 678 IPR017871 GO:0005524|GO:0016887
Vvi17g0571 958 Pfam ABC-2 family transporter protein 199 438 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0571 Vvi-Chr17 6379678 6387454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0571 487 777 Calmodulin-binding Proteins AT2G36910 22.186 4.40e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0571 - - vvi:100258795 1830.84