Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0568 ATGCTGTTATATTTGGTCCAGATGACACTCCATGGGATGGAGTTTTCGGAGGAGTATCCAAACAAACCACCAACAGTGCGATTTGTTTCCCGTATGTTCCATCCAAATATCTATGCAGATGGAAGTATTTGTCTCGATATTCTACAAAATCAGTGGAGTCCTATATATGATGTAGCAGCTATACTTACGTCTATTCAGTCACTGCTCTGTGATCCCAACCCCAATTCTCCTGCAAATTCAGAAGCTGCTCGGATGTTTAGTGAGAATAAGCGTGAGTACAACAGAAGAGTGAGGGAAATTGTTGAGCAGAGCTGGACAGCGGACTAA 327 0.4281 MLLYLVQMTLHGMEFSEEYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0568 108 CDD UBCc 13 101 IPR000608 -
Vvi17g0568 108 Gene3D Ubiquitin Conjugating Enzyme 6 108 IPR016135 -
Vvi17g0568 108 SMART ubc_7 2 106 - -
Vvi17g0568 108 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 106 IPR000608 -
Vvi17g0568 108 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 33 48 IPR023313 -
Vvi17g0568 108 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 105 - -
Vvi17g0568 108 Pfam Ubiquitin-conjugating enzyme 13 100 IPR000608 -
Vvi17g0568 108 SUPERFAMILY UBC-like 13 106 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0568 Vvi-Chr17 6349889 6356415 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0568 K10573 - vvi:100246805 199.134