Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0563 ATGCTGACATTTTTTAGGCTTTACTTGCAGCATAAAAGCCCCTATCTCCAATCTACACGAACGCATTCAATCATTTTTCTCCAAACGCTGTGTTTCAATCCATCTCTGAGTTCAAGGAGAATGAAAAATTCGGAGGCAAATTCAATTGTGACGAAGAAGGAGAAGGGAATACAAATCGAAGGATACCCAGTTGAGGGTTTGTCGATAGGAGGGCAAGAAACTTGCATAATCCTCCCCTCCCTCAAGTTAGCCTTTGACATTGGTAGATGTCCCCAGCGTGCAATTTCGCAGGACTTCCTGTTCATTTCCCATGGACACATGGATCACATTGGAGGACTGCCCATGTATGTTGCGACTCGTGGGTTGTATAGAATGAAGCCCCCAATAATTATTGTACCAAAAGCTATAAAAGAAAATGTGGAGATGCTTTTTCAGGTGCACAGAGCAATGGATGAGTCAGAGCTGAAGCATAATCTAATTGGCTTGAATGTGGGAGAAGAGTTTTACTTAAGAAAAGACTTGAAAGTAAGAGCGTTTAGAACCTACCATGTTATACCAAGCCAGGGTTATGTAGTTTATTCTGTAAAGCAGAAACTGAAGCAGGAGTATGTTGGCCTTCCTGGGAATGAGATTAAGAACTTGAAGTTATCAGGTGTGGAGATTACATATACAATGACAACACCTGAAATTGCCTTTACGGGAGATACCATGTCAGACTTCATTCTGGATCACACTAATGTTGATGCTTTGATGGCAAGAGTTCTCATCATGGAGAGCACCTTTGTTGACAACACAGTGACTGTGGAGCATGCAAGAGAATATGGCCACACTCATTTGTCTGAGATAGTCAGTTATGCAGATAGGTTTCAGAATAAAGCAATTCTTCTGATCCACTTCTCTGCTCGTTATACAACAGATGAAATTCAAGAAGCTGTCTCTGCATTGCCTCCGCCTTTGGGAGGTCGAGTATTTGCACTGACAGAAGGATTTTGA 993 0.4189 MLTFFRLYLQHKSPYLQSTRTHSIIFLQTLCFNPSLSSRRMKNSEANSIVTKKEKGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHIGGLPMYVATRGLYRMKPPIIIVPKAIKENVEMLFQVHRAMDESELKHNLIGLNVGEEFYLRKDLKVRAFRTYHVIPSQGYVVYSVKQKLKQEYVGLPGNEIKNLKLSGVEITYTMTTPEIAFTGDTMSDFILDHTNVDALMARVLIMESTFVDNTVTVEHAREYGHTHLSEIVSYADRFQNKAILLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0563 330 Pfam Beta-lactamase superfamily domain 98 299 IPR001279 -
Vvi17g0563 330 Gene3D - 63 317 IPR036866 -
Vvi17g0563 330 CDD RNaseZ_MBL-fold 57 259 - -
Vvi17g0563 330 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 316 IPR036866 -
Vvi17g0563 330 PANTHER TRNASE Z TRZ1 35 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0563 Vvi-Chr17 6265859 6279102 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0563 K00784 - vvi:100262176 650.973