Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0556 ATGACGACCTCGGCTCAACCACCCCCACCGCCATCCAAGACCCAACGCAAGCTCATTGTCGAAATCGTTGACGCTCGTGATCTTCTCCCCAAGGACGGCCAGGGAAGCTCAAGTCCTTACGTGATCGTGGACTTCGACGGGCATAAGCAGCGAACGACTACTAAGTACAGGGATTTGAATCCAGTATGGAACGAGAAGCTAGAGTTCTTGGTTTCGGATCCGGATACCATGGAGGTCGAGGAACTGGAGATCGAGGTCTTCAATGATAAGAGAATGGGGAATGGGGGTGGTAGTTCCAGGAAGAACCATTTTCTGGGGCGCGTCAAGCTGTATGGAAGTCAGTTTGCCAAGAGAGGAGAGGAAGGGTTGGTGTATTTTCCTTTGGAGAAGAAGAGTGTGTTCAGTTGGATTAGAGGTGAGATTGGGTTGAGGATTTATTACTATGACGAAGAGGTGGTTGAGGAGACCAAGACGCCGGAGGAACCTCCACCGCAGGCCGATGTAAAGAAGCCACCGGTGGAGGAAAGTAGAGTGCAGTCGTTGGAGATTCCGGTTGCGCAGATGGAGGTTGTTAGGGAGGGCTCGCAGTCGCCACCAATTGTGATCATTGAGGAGTCACCTCCGCCGCCAGTGAGTCTGCAGACGGAGCATCATGTGCCGGAGGAGGTGCAATCGGAGATGAGGAGGATGGTGCAGGGTGTGAAAATGGGAGGTGGAGAAAGGGTGAGGCTTTGGAGGAGACCGAACGGAGATTACTCCCCAAAAGTTATCCGTGGGAGGTTCACCAGCGAGTCCGAGAAGATGACGGCGTACGATCTTGTGGAGCCCATGCAGTACCTCTTCGTGCGAATCGTCAAGGCCCGCCGACTCTCACCCACCGAGAGTCCCTGCGTAAAGATCCGAACTGCTGGTCACTTCTTGAGATCAAAACCAGCGACTCTACGGCCTGGTGAGTCATGGGAAAACCCTGAGTGGCACCAGGTCTTTGCTCTCGGCTACAACAAGTCCGATTCAGCAAGCGCCACGTTAGAGATCTCAGTTTGGAACGGAACGTCGGAACAGTTCCTCGGTGGCGTTTGCTTCGATCTCTCAGATGTGCCCGTACGAGATCCTCCGGATAGTCCTCTTGCTCCGCAATGGTACCGTCTTGAAGGCGCCGACGATCAAAATTCCGGCATCGTATCTGGCGATATCCAGCTCTCAGTTTGGATCGGAACTCAGGCGGATGATGCATTTCCGGAATCATGGAGTTCCGACGCACCCTACGTGGCCCACACGCGCTCAAAGGTTTATCAGTCGCCAAAGCTATGGTACCTCAGAGTTACAGTGATGGAAGCACAAGACCTTCACATTGCTTCGAATCTTCCTCCATTAACAGCTCCAGAGGTTCGCGTGAAAGCGCAGTTAGGGTTCCAATCCGTGCGGACCAGGAGGGGGTCCATGAGCAGTCACAGTTCTTCATTCTTCTGGCATGAGGACCTCGTCTTCGTCGCCGGCGAGGCTCTGGAGGACCACTTGATCCTGTTGGTGGAGGACCGCACGGCCAAGGACGCCCTGCTTCTCGGCCATGTCGTAGTGCCGGTGAGCGCCATCGAGCAGCGAATAGACGAGCGCCACGTGGCATCCAAATGGTTCCCACTGGATGGCGGGTGCGTAGGTGGGCCCTACTGTGGGAGAATCAATCTACGGCTATGCTTGGAGGGTGGGTATCACGTGCTGGACGAGGCAGCCCAGGTGTGCAGCGACTTTCGGCCAACGGCGAAGCAACTGTGGAAGCCGGCGGTGGGTGTTTTAGAGCTTGGAATCCTGGGGGCTCGTGGATTGCTGCCCATGAAAACGAAGGGCGGAGGTAAAGGTTCCACCGATGCTTACTGCGTCGCCAAGTATGGGAAGAAATGGGTGAGAACCAGGACCATTACAGACAGCTTCGACCCACGCTGGAACGAGCAGTATACGTGGCAAGTCTACGACCCATGCACCGTTCTGACCATCGGAGTATTCGACAACTTGCGAATGTTTGCGCCAGACATGCCGGAGGAGAAGCCTGACTACCGTATAGGAAAAGTCCGCATACGCGTATCCACATTGGAGAGCAACAAGGTGTACACCAATTCCTATCCCTTGCTCGTCCTCCAGAGAACCGGGTTGAAGAAAATGGGGGAGATCGAATTAGCGATTCGCTTCGCATGTCCTTCAATGTTGCCCGAAACCTGCGCCATCTACGGCCAGCCACTGCTCCCACGAATGCACTATCTCCGCCCACTGGGGGTGGCGCAGCAGGAGGCGCTGCGTGGGGCCGCCACTAAAATAGTGGCAGCATGGCTTGTACGATCAGAGCCACCGCTGGGGCCTGAGGTGGTCCGTTACATGCTGGACGCAGACTCCCACACTTGGAGCATGAGAAAGAGCAAGGCCAACTGGTTTCGAATTGTGGCGGTGCTTGCATGGGCAGTGGGTTTGGCAAAATGGTTGGATGATATTCGAAGGTGGAAGAACCCAATCACCACTGTACTCGTCCACGTCTTGTACTTGGTGCTTGTTTGGTACCCAGATTTAATAGTCCCAACGGGCTTCCTGTACATATTCTTGATCGGATTATGGTACTACCGCTTCAGGCCCAAAATCCCAGCCGGCATGGACATCAGACTCTCTCAGGCGGAAACTGTGGACCCGGATGAGCTTGACGAGGAATTCGACACCATCCCAAGTTCCAAGCCCCCCGAAATAATCCGAGCCCGATACGACCGGTTGAGAATGCTGGCAGCCCGGGTCCAAACAGTACTGGGTGATTTTGCGACCCAAGGCGAGAGGGTGCAAGCACTGGTGAGCTGGAGGGACCCAAGGGCCACAAAATTATTCATAGGAGTGTGCCTCATTGTGACAGTGGTACTGTATGCGGTGCCACCAAAAATGGTGGCAGTGGCCATAGGATTCTATTTCTTACGCCACCCCATGTTCAGGGACCCAATGCCACCAGCTAGCCTCAATTTCTTTAGGAGGCTTCCAAGCTTGTCTGATAGGTTAATGTAG 3030 0.5455 MTTSAQPPPPPSKTQRKLIVEIVDARDLLPKDGQGSSSPYVIVDFDGHKQRTTTKYRDLNPVWNEKLEFLVSDPDTMEVEELEIEVFNDKRMGNGGGSSRKNHFLGRVKLYGSQFAKRGEEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEEVVEETKTPEEPPPQADVKKPPVEESRVQSLEIPVAQMEVVREGSQSPPIVIIEESPPPPVSLQTEHHVPEEVQSEMRRMVQGVKMGGGERVRLWRRPNGDYSPKVIRGRFTSESEKMTAYDLVEPMQYLFVRIVKARRLSPTESPCVKIRTAGHFLRSKPATLRPGESWENPEWHQVFALGYNKSDSASATLEISVWNGTSEQFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGADDQNSGIVSGDIQLSVWIGTQADDAFPESWSSDAPYVAHTRSKVYQSPKLWYLRVTVMEAQDLHIASNLPPLTAPEVRVKAQLGFQSVRTRRGSMSSHSSSFFWHEDLVFVAGEALEDHLILLVEDRTAKDALLLGHVVVPVSAIEQRIDERHVASKWFPLDGGCVGGPYCGRINLRLCLEGGYHVLDEAAQVCSDFRPTAKQLWKPAVGVLELGILGARGLLPMKTKGGGKGSTDAYCVAKYGKKWVRTRTITDSFDPRWNEQYTWQVYDPCTVLTIGVFDNLRMFAPDMPEEKPDYRIGKVRIRVSTLESNKVYTNSYPLLVLQRTGLKKMGEIELAIRFACPSMLPETCAIYGQPLLPRMHYLRPLGVAQQEALRGAATKIVAAWLVRSEPPLGPEVVRYMLDADSHTWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPITTVLVHVLYLVLVWYPDLIVPTGFLYIFLIGLWYYRFRPKIPAGMDIRLSQAETVDPDELDEEFDTIPSSKPPEIIRARYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCLIVTVVLYAVPPKMVAVAIGFYFLRHPMFRDPMPPASLNFFRRLPSLSDRLM* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0556 1009 ProSiteProfiles C2 domain profile. 417 545 IPR000008 -
Vvi17g0556 1009 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 596 749 IPR035892 -
Vvi17g0556 1009 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 437 587 IPR035892 -
Vvi17g0556 1009 Gene3D C2 domain 594 732 IPR035892 -
Vvi17g0556 1009 ProSiteProfiles C2 domain profile. 261 381 IPR000008 -
Vvi17g0556 1009 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 421 IPR035892 -
Vvi17g0556 1009 SMART C2_3c 17 124 IPR000008 -
Vvi17g0556 1009 SMART C2_3c 597 705 IPR000008 -
Vvi17g0556 1009 SMART C2_3c 438 540 IPR000008 -
Vvi17g0556 1009 SMART C2_3c 279 375 IPR000008 -
Vvi17g0556 1009 FunFam C2 domain-containing protein 579 732 - -
Vvi17g0556 1009 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 17 1009 IPR047259 -
Vvi17g0556 1009 Pfam Plant phosphoribosyltransferase C-terminal 854 1009 IPR013583 -
Vvi17g0556 1009 CDD C2D_MCTP_PRT_plant 597 725 IPR047255 -
Vvi17g0556 1009 MobiDBLite consensus disorder prediction 156 175 - -
Vvi17g0556 1009 CDD C2A_MCTP_PRT_plant 17 149 - -
Vvi17g0556 1009 Gene3D C2 domain 262 403 IPR035892 -
Vvi17g0556 1009 Gene3D C2 domain 422 567 IPR035892 -
Vvi17g0556 1009 Gene3D C2 domain 12 178 IPR035892 -
Vvi17g0556 1009 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 17 166 IPR035892 -
Vvi17g0556 1009 FunFam C2 domain-containing protein 261 404 - -
Vvi17g0556 1009 CDD C2B_MCTP_PRT_plant 279 406 IPR047257 -
Vvi17g0556 1009 ProSiteProfiles C2 domain profile. 579 706 IPR000008 -
Vvi17g0556 1009 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Vvi17g0556 1009 CDD C2C_MCTP_PRT_plant 438 585 IPR047258 -
Vvi17g0556 1009 Pfam C2 domain 437 547 IPR000008 -
Vvi17g0556 1009 Pfam C2 domain 597 708 IPR000008 -
Vvi17g0556 1009 Pfam C2 domain 17 116 IPR000008 -
Vvi17g0556 1009 Pfam C2 domain 279 381 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0556 Vvi-Chr17 6173381 6176410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0556 2 1009 Lipid Metabolism Gene Families AT1G74720 70.718 0.0 1538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0556 - - vvi:100262158 1995.7