Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0555 ATGGCGTATCGTCCTAGTTTCTACCTTGAAATCGGCAGAAAGGCTAGAGATCTCCTGTACAGGGATTATACAGAGCAACCACCAATGCACTATCACTATGGGTGCTGCGACTGGAGCTATGATTTGGCCTTGAGATCTCAAATTTGTCGGTCGACTTCGCACGAAATAAATGACAACAACCAAGAATTAGTGGGGGAGCATGTTCCTGGAATCAGCGCAGTTCTGCGATTTATTGTTCCTGATCCGTTGTCTAGCAAGGTAGAACTTCGGTATTTGCGCGATTTTCTGGGGATTACAGCAGGGATTGAGGGGATGACAACAAACCCAGTGATGAGCTTCTCGGGTGTGATCGGAAGCAGTGTCGTCTCCCTTGGAACTGATCTGGCATTCGACACCATTCTAAAGAACTTCACCAAATGCAATGCTGGTTTGAGCTTCAGCAGCCCAATCGTGTCTGCTTCGTTGACCTTGGAAGACAAGGGGGATACTGCAAAGGCTTCCTGTTTCGGGTTAATTAACCCGCTGACGAGCACGGCCATTGCAGCAGAGCTGAAACATACGTTTTCTCAGAATGAGACATCTCTGACCCTGGGAGCCCAGCATGAGGTCGCCCCCTTGACGGTGATAAAAGCACGGGCGGACACCACTGGGAAGGTGGGTGCTCTCTTCCAGCATCAACTTGTGTCAAAGATTTTCTTAACTCTTGCTGGGGATGTGGACATCCAGGAGCTCAAGACCAGTCCTACAATCGGATTGTCTTTGGCTCTCAGGCCTTAG 777 0.4942 MAYRPSFYLEIGRKARDLLYRDYTEQPPMHYHYGCCDWSYDLALRSQICRSTSHEINDNNQELVGEHVPGISAVLRFIVPDPLSSKVELRYLRDFLGITAGIEGMTTNPVMSFSGVIGSSVVSLGTDLAFDTILKNFTKCNAGLSFSSPIVSASLTLEDKGDTAKASCFGLINPLTSTAIAAELKHTFSQNETSLTLGAQHEVAPLTVIKARADTTGKVGALFQHQLVSKIFLTLAGDVDIQELKTSPTIGLSLALRP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0555 258 CDD Porin3_VDAC 5 257 IPR001925 GO:0005741|GO:0008308|GO:0098656
Vvi17g0555 258 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 54 258 IPR001925 GO:0005741|GO:0008308|GO:0098656
Vvi17g0555 258 Gene3D Porin 3 257 IPR023614 -
Vvi17g0555 258 FunFam Mitochondrial outer membrane protein porin 1 isoform A 2 257 - -
Vvi17g0555 258 Pfam Eukaryotic porin 79 244 IPR027246 GO:0005741|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0555 Vvi-Chr17 6167920 6170105 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0555 K15040 - vvi:100245018 507.679