Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0554 ATGGGTAATCTGCTTGGTTGCATACAAGTCGATCAATCCACAGTAGCTATCAAGGAGAGATTTGGCAAGTTTGAGGAAGTGCTTGAGCCAGGATGCCATTGCTTGCCTTGGTGCTTTGGGAGTCAGCTTGCTGGCCATCTTTCACTTAGGTTGCAACAGTTGGATGTGCGTTGTGAGACCAAGACAAAGGACAATGTGTTTGTCAATGTTGTTGCTTCTATACAATATCGTGCCCTGGCAGATAAGGCAAATGATGCTTTTTACAAACTCAGCAATACAAGGTCCCAGATCCAGGCTTATGTTTTTGATGTTATTAGAGCAAGTGTTCCAAAGCTCAATCTGGACGATGCATTTGAGCAAAAAAATGAAATTGCTAAATCTGTGGAAGATGAACTTGAAAAGGCTATGTCTGCCTATGGGTATGAGATTGTACAAACACTCATTGTTGATATAGAACCAGATGAGCATGTGAAGCGAGCAATGAATGAAATCAATGCTGCTGCAAGAATGAGGGTGGCAGCCAATGAGAAGGCGGAGGCTGAGAAAATTTTGCAAATCAAGCGTGCAGAGGGTGAGGCTGAGTCCAAGTATCTATCAGGGCTTGGTATTGCTCGTCAGCGTCAAGCAATTGTTGATGGCTTGAGAGACAGTGTGCTAGGCTTCTCAGTCAATGTTCCAGGCACCACTGCGAAGGATGTGATGGACATGGTCCTCGTCACACAGTACTTCGACACCATGAAGGAAATTGGTGCTGCTTCTAAATCCTCAGCTGTGTTCATCCCCCATGGACCCGGAGCTGTTCGTGATGTGGCTACTCAGATTCGTGATGGACTTCTTCAGAGTACCCTCTCACATCAGTAA 861 0.4541 MGNLLGCIQVDQSTVAIKERFGKFEEVLEPGCHCLPWCFGSQLAGHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKSVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQSTLSHQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0554 286 Coils Coil 279 286 - -
Vvi17g0554 286 Gene3D Band 7 domain 42 167 IPR036013 -
Vvi17g0554 286 Coils Coil 157 190 - -
Vvi17g0554 286 SUPERFAMILY Band 7/SPFH domain 46 171 IPR036013 -
Vvi17g0554 286 Coils Coil 118 138 - -
Vvi17g0554 286 SMART PHB_4 5 165 IPR001107 -
Vvi17g0554 286 CDD SPFH_like_u4 10 278 - -
Vvi17g0554 286 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 5 282 - -
Vvi17g0554 286 FunFam Hypersensitive-induced response protein 1 41 167 - -
Vvi17g0554 286 Pfam SPFH domain / Band 7 family 9 182 IPR001107 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0554 Vvi-Chr17 6164138 6166228 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0554 - - vvi:100245034 558.91