Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0553 ATGGCGTCCCGTCTGGAAATTCTCTTCCTTGTATCTCTCTTTTCGGTTCTGCTAACCCCATTGCATTGTAGTGTTTTTGACGTAACCCAATATGGAGCAATTGGAAATGGCAGCACAGACGACAGTCCAGCTTTCATGCTTGCTTGGACTGATGTCTGCAACTCTTCAGCTTCTACTCCAATATTCCATATTCCTGGGAACAAAACCTTTTTGCTCAATCCTGTGTTCTTCCAGGGTCCTTGCAGGTCCACAAACATCCAGTTCCAGATAGATGGGATCATAACTGCTGAAAGTGAACCTTCAAACTGGAAATGTACAAGAAATAGATGCGATAAGTGGATTCATTTTAAGCGTGTGGATGGACTTTTCATCAATGGTTCCGGTATCATTGATGGCAATGGGAAGAATTGGTGGAGTTCAGGCTATATTAATGCTTTGGAAGTGACGAGCTCGAACAAGGTCCAATTGACCGGATTAAGTTTCAGAAACAATCCTCACATGCATGTAGTCTTTGATTCCTGCGACATGGTGCATATTTCAAATGTATCAATAGATGCACCCGGGGACAGTCCAAATACGGATGGTATTCACCTCAAAGAGAGCACCCATGTCAACATCGAGTTTTGCAGCATTAGAACTGGCGATGATTGCATATCAATAGTAGACAAGTGCTCCAACATCACCATTCAAAATATTGAATGTGGTCCTGGCCATGGCATAAGTATTGGAAGCATGGGGCAATATGGAGCATATGAGACCGTAGAAAATATTTACGTTAGCGATGTTCAATTTAAAGGGAGCTTGAGCGGTGTTCGGATCAAGACATGGCAGGGAGGCAAAGGTCATGCAAGGAAAATGGTCTTCAAGGGGATAACATCCTTAAACACCCAGTACCCTATCCAAATTGACCAATTTTACTGCCCCCATGCAAAATGCGATGAACAAGCTGATGCAGTGGAAATCAGCGATATCTCATATATTGATATAAAGGGGACATCAATGAGGAAGACAGCAGTGAAGTTAGCCTGCAGTGAATCAGTTCCATGCAAAAATATATTCATGCAGGACATAAACTTGAGTTACCAGGGGACTAATGCCTCAGCTTACTGTAAGAACGTTAATGGAACATCTCAAGGAATAATGGAACCTTCTGTTCCTTGCTTGTATTATCAGACATCGTAG 1182 0.4255 MASRLEILFLVSLFSVLLTPLHCSVFDVTQYGAIGNGSTDDSPAFMLAWTDVCNSSASTPIFHIPGNKTFLLNPVFFQGPCRSTNIQFQIDGIITAESEPSNWKCTRNRCDKWIHFKRVDGLFINGSGIIDGNGKNWWSSGYINALEVTSSNKVQLTGLSFRNNPHMHVVFDSCDMVHISNVSIDAPGDSPNTDGIHLKESTHVNIEFCSIRTGDDCISIVDKCSNITIQNIECGPGHGISIGSMGQYGAYETVENIYVSDVQFKGSLSGVRIKTWQGGKGHARKMVFKGITSLNTQYPIQIDQFYCPHAKCDEQADAVEISDISYIDIKGTSMRKTAVKLACSESVPCKNIFMQDINLSYQGTNASAYCKNVNGTSQGIMEPSVPCLYYQTS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0553 393 ProSitePatterns Polygalacturonase active site. 231 244 IPR000743 GO:0004650|GO:0005975
Vvi17g0553 393 FunFam Pectin lyase-like superfamily protein 18 389 - -
Vvi17g0553 393 Gene3D - 19 393 IPR012334 -
Vvi17g0553 393 SMART pbh1 201 222 IPR006626 -
Vvi17g0553 393 SMART pbh1 254 275 IPR006626 -
Vvi17g0553 393 SMART pbh1 224 244 IPR006626 -
Vvi17g0553 393 SMART pbh1 174 200 IPR006626 -
Vvi17g0553 393 PANTHER - 25 376 - -
Vvi17g0553 393 Pfam Glycosyl hydrolases family 28 62 375 IPR000743 GO:0004650|GO:0005975
Vvi17g0553 393 SUPERFAMILY Pectin lyase-like 14 390 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0553 Vvi-Chr17 6154649 6156718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0553 25 389 Glycoside Hydrolase AT1G23460 40.053 1.84e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0553 K01184 - vvi:104882408 485.337