Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0552 ATGGCTTTTCCACGCTCAACTTGTTTGCTTCTACTCTTGGCTTCATTTTTGCTAACTCCATTGGAAGGTCATACTTTTAATGTCATGGACTATGGTGCAATTGGAAATGGCAGAACCGATGACAGTGAAGCTTTCATGAAAGCTTGGAGTGATGTGTGCAAGGCTTCAGCTTCTCCAACGTTTCTTGTTCCTGGAGACAGAAGGTTTTTGATCAATCCCGTCGTCTTCGAGGGCCGCTGTAGGTCCAAAAAAATTAAGTTCAAGGTAGATGGGACTATAACGGCGCCAAGTGAACCTTCAAAATGGAAATGCATTAATAAGCAATGCCATAGTTGGATCAGCTTTAAGCATGTAGATGGCCTTGTCATCTCTGATTGCATGTATTCCTTGACTAATTTACAGGCTTTGGTAGTAGCAAGATCCAACAATGTCCAATTACATGATCTAAGTTTCAAAGACAATCCCCACATGCATGTAGTCTTTCATCACTGCGACGGGGTGAAGATTTCACATATATCAATAGATGCACCTGAGGACAGTCCTAATACTGATGGTATTCACCTCAAAGAGACTGCCAGTGTCATCATAGAACATTGTACCATTGGCACTGGCGATGATTGCATTTCGCTGGTAGATGGATCAACTCATATTGACATGAGACACATTAAATGCGGTCCTGGGCATGGCATAAGCATTGGAAGCCTGGGAAAATTCGGACTGAGCGAGACAGTAGAATATATTCATGTTAAGGATGCTCAATTTACAGGGACAACAAATGGCGTTAGAATAAAGACATGGCAGGGAGGCCGAGGTCATGCAAGGAACATGATTTTTGAGAAAATCAGATCTTCCGATTCTGAATATCCTATCATCATTGATCAATTTTACTGTGATCATACAGAATGCCACGACAAACCTAATGCAGTGGAAATTCGCAATATCTCATACATTGATGTAAAGGGCACGTCAAAGAAGGAGACTGCAGTGAAGATTGCATGCAGTGACACAGTTCCATGCAGAGATATATTCATACAGAACATAAACTTGATCTATGATCAGTCAGGAAAGCAAGCCTCAGCTTACTGCAAAAATGTTATTAATGGATACTACCACGGAGTAGTCAGACCCAATATATCTTGCTTGCAGAACGACAAACTCCCGTAA 1164 0.4158 MAFPRSTCLLLLLASFLLTPLEGHTFNVMDYGAIGNGRTDDSEAFMKAWSDVCKASASPTFLVPGDRRFLINPVVFEGRCRSKKIKFKVDGTITAPSEPSKWKCINKQCHSWISFKHVDGLVISDCMYSLTNLQALVVARSNNVQLHDLSFKDNPHMHVVFHHCDGVKISHISIDAPEDSPNTDGIHLKETASVIIEHCTIGTGDDCISLVDGSTHIDMRHIKCGPGHGISIGSLGKFGLSETVEYIHVKDAQFTGTTNGVRIKTWQGGRGHARNMIFEKIRSSDSEYPIIIDQFYCDHTECHDKPNAVEIRNISYIDVKGTSKKETAVKIACSDTVPCRDIFIQNINLIYDQSGKQASAYCKNVINGYYHGVVRPNISCLQNDKLP* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0552 387 ProSitePatterns Polygalacturonase active site. 221 234 IPR000743 GO:0004650|GO:0005975
Vvi17g0552 387 Gene3D - 18 379 IPR012334 -
Vvi17g0552 387 Pfam Glycosyl hydrolases family 28 134 366 IPR000743 GO:0004650|GO:0005975
Vvi17g0552 387 PANTHER - 25 365 - -
Vvi17g0552 387 SUPERFAMILY Pectin lyase-like 12 381 IPR011050 -
Vvi17g0552 387 FunFam Pectin lyase-like superfamily protein 18 382 - -
Vvi17g0552 387 SMART pbh1 164 190 IPR006626 -
Vvi17g0552 387 SMART pbh1 244 265 IPR006626 -
Vvi17g0552 387 SMART pbh1 191 212 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0552 Vvi-Chr17 6151295 6153981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0552 27 381 Glycoside Hydrolase AT1G23460 41.223 2.61e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0552 K01184 - vvi:104882408 768.459