Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0546 ATGACAGACCCTACACCTTTTAACAAGAAGCTACAAGGTAAAGTGGCTATCATCACCGGCGGCGCAAGCGGCATCGGCGAGGCTACGGCACGTCTCTTCGCCGATCACGGCGCACGAGCCGTCGTTGTAGCCGACATCCAAGACGAGCTGGGCCGTGGCGTCGCCGAGTCAATCGGCTTACACCGCTGCAGGTACATTCACTGTGATGTAACCGATGAGCAGCAGATCAAAGCGATGGTGGAATCGACGGTGAAGATGTTCGGACAACTCGACATCATGTTCAGCAACGCTGGGGTTATGAGTATGGGCGACCAGACCATACTGGAGCTGGATCTATCAGCTTCCGACAAGGTGTTTGCAGTAAACGCACGCGGCATGGCGGCGTGTGTGAAGCACGCGGCGCGTGCGATGGTGGAGGGTGGTGTTAAAGGGAGCATAGTGTGCACGGCGAGCGTGGCTGCGACGGTGGGGAATGACAAGTTCACTGACTACATAATGTCGAAGCACGCGGTGTTGGGGCTAGTGAGATCGGCGAGTAAGCAGCTGGGCGCGTACGGAATAAGGGTGAATTGCGTGTCACCGACGGCAGTGGCGACGCCAATGCTTTGCAGCGCATTTAAGATGGGCGTGGAGGAGGCGGAGAAATTTTTTGTAGAGGACATGGATTTAAAAGGGAGAGGGGCAGTGCAAGTGAGACACGTGGGGGATGCAGCGTTGTTTCTTGCTTCCGACGATTCTGAGTTTATAACGGGACATAACTTGGCCATCGACGGGGGCTTCCGCCGGTGA 789 0.5615 MTDPTPFNKKLQGKVAIITGGASGIGEATARLFADHGARAVVVADIQDELGRGVAESIGLHRCRYIHCDVTDEQQIKAMVESTVKMFGQLDIMFSNAGVMSMGDQTILELDLSASDKVFAVNARGMAACVKHAARAMVEGGVKGSIVCTASVAATVGNDKFTDYIMSKHAVLGLVRSASKQLGAYGIRVNCVSPTAVATPMLCSAFKMGVEEAEKFFVEDMDLKGRGAVQVRHVGDAALFLASDDSEFITGHNLAIDGGFRR* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0546 262 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Vvi17g0546 262 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Vvi17g0546 262 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Vvi17g0546 262 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Vvi17g0546 262 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Vvi17g0546 262 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Vvi17g0546 262 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Vvi17g0546 262 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Vvi17g0546 262 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Vvi17g0546 262 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 8 260 - -
Vvi17g0546 262 Gene3D - 5 261 - -
Vvi17g0546 262 Pfam Enoyl-(Acyl carrier protein) reductase 20 260 - -
Vvi17g0546 262 FunFam Short-chain dehydrogenase reductase 1 262 - -
Vvi17g0546 262 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 260 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0546 Vvi-Chr17 6124187 6124975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0546 7 260 Miscellaneous Gene Families AT4G05530 31.274 3.22e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0546 - - vvi:100265615 514.998