Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0545 ATGAAATGTCTCTTCGTCGATAACGGCGCACGTGCCGTCGTTATAGCTGACATCCAAGATGAGCTAGGCTGTGGTTGTAGTAAACGCATGCGTCATGGTGGCGTGTGTGAAGCATGCGACACGTGCGATGGTGAAGTTAAAGAGAGCATAGTGTGCACGACAAGCATGTTTGCGACGATGGAGAGTGACAAGTTTATTGACTACACGATGTCCAAGCACGCGGTGTTGGGGTTGGTGAGATCAGTGAGTAAGCAGCTGGGCGCGTACGGAATAAGGGTGAATTGTGTGTCACCGATGGTGGTGGCGACGACATTGGTTTGCAGCTCGGCTAAAATGGGCATGGAGGAGGCTGAGAAATTTTTTGGATAG 369 0.5068 MKCLFVDNGARAVVIADIQDELGCGCSKRMRHGGVCEACDTCDGEVKESIVCTTSMFATMESDKFIDYTMSKHAVLGLVRSVSKQLGAYGIRVNCVSPMVVATTLVCSSAKMGMEEAEKFFG* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0545 122 PRINTS Glucose/ribitol dehydrogenase family signature 89 106 IPR002347 -
Vvi17g0545 122 PRINTS Glucose/ribitol dehydrogenase family signature 68 87 IPR002347 -
Vvi17g0545 122 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 111 IPR036291 -
Vvi17g0545 122 Pfam Enoyl-(Acyl carrier protein) reductase 48 110 - -
Vvi17g0545 122 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 46 121 - -
Vvi17g0545 122 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 55 83 IPR020904 GO:0016491
Vvi17g0545 122 Gene3D - 26 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0545 Vvi-Chr17 6117344 6117909 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0545 - - vvi:100265615 119.783