Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0544 ATGAGTGTAGGTATGCAGGATGTACTCGATTTCGACTTATCGGCCTACGATACGTTGTTCGCGATCAACGTACGTGGCGTGGCAGCGAGTGTGAAGCACGCAGCGCGTGCGATGGTGGAGGGTAAGGTGAAGGGAAGCATAATATGTACAGCGAGCGTCTCCGCCAGCACTGGGAGCGACAAGTTCATAGACTACGTGATGTCGAAGATGGCAGTGCTGGGGCTAGTGAAGTCGGCGAGTAGACAGCTGGGCGCGTATGGAATACGGGTGAATAGCGTTTCGCCGGGGGCGGTGGCGACGCCGCTGCTGTGCGACAAGTTTCAGATGAGCGCGACGGAGGTGGAGAATAATTTCGAACAGTATATGTCCTTGAAGGGTCTAAATATGGAAAAACATTTGTTCCTTTTGTTTCCAAAAGAAACATTCAAAACATTAAAAATAGCAAAGAATATTAAAAATGCTTTAGATAATGATTCTACTCCAAATATTTTTAGTAGAAGTACTTTTAGGAGAATCACATATTAA 525 0.4629 MSVGMQDVLDFDLSAYDTLFAINVRGVAASVKHAARAMVEGKVKGSIICTASVSASTGSDKFIDYVMSKMAVLGLVKSASRQLGAYGIRVNSVSPGAVATPLLCDKFQMSATEVENNFEQYMSLKGLNMEKHLFLLFPKETFKTLKIAKNIKNALDNDSTPNIFSRSTFRRITY* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0544 174 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 117 IPR036291 -
Vvi17g0544 174 Pfam Enoyl-(Acyl carrier protein) reductase 6 124 - -
Vvi17g0544 174 Gene3D - 1 138 - -
Vvi17g0544 174 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 52 80 IPR020904 GO:0016491
Vvi17g0544 174 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 5 130 - -
Vvi17g0544 174 PRINTS Glucose/ribitol dehydrogenase family signature 39 55 IPR002347 -
Vvi17g0544 174 PRINTS Glucose/ribitol dehydrogenase family signature 86 103 IPR002347 -
Vvi17g0544 174 PRINTS Glucose/ribitol dehydrogenase family signature 65 84 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0544 Vvi-Chr17 6081906 6089504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0544 9 96 Acyl Lipid Metabolism Gene Families AT3G55290 31.461 5.40e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0544 - - vvi:100248440 243.432