LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0541	ATGGAAAACAATGAAAAAGTTGTTGCAACTGATGAACCGAAGACGAAGCACAGAGGAATTAAAGCCATGCCCTTTGTAATTGGCAACGAGACATTCGAGAAGCTGGGTACAATTGGCACCTCAACCAACCTCTTGGTCTATCTCACTACTGTCTTCAACATGAAGAGCATCACTGCTACAACTTTTGTCAACGTCTTCAATGGCAGCACCAACTTCGCTACCTTGATAGGAGCATTCCTCTGTGACACTTACTTTGGCCGCTACACCACACTGGGTTTTGCTTCCATATCTTCATTCCTGGGGATGCTAGTAATAACACTAACGGCGGCGGTACAGAAGATGCATCCTCCTCACTGTGGAACGACGGACACTGGCACATGCATTGGGCCAACAGCAGGGCAAATGGCTTTTCTACTGAGTGGATTTGGACTACTGGTAATTGGAGCTGCTGGGATCCGGCCATGTAACTTGGCCTTTGGAGCCGACCAGTTCAATCCAGAAACTGAATCTGGGAAGAGGGGAATCAGTAGCTTCTTCAATTGGTACTACTTCACCTATACTTTTGCCATGATGGTGTCCCTGACAGTCATTGTCTATGTGCAATCTGACGTGAGCTGGTCTCTGGGGTTAGCAATTCCCACGCTTCTGATGTTATTATCATGTGCACTATTTTTCATGGGCACGAGAATATATGTGAAGGTAAAACCTGAGGGTAGCCCCTTGAAGAATGTGGCGCAGGTCATAGTTGCTGCAGTGAAGAAGAGGCGACTGGAGTTACCAGGGCAACCATGGCTCTCTCTTTTTAATCATATTCCTGCAAATTCTATCAACTCCAAGCTTCCTCACACAGACCAATTCAGATTCCTCAGCAAAGGTGCAATCCTAACCCCTGAAGTCCAAATCAACTCAGATGGGTCAGCAGCCAATCCTTGGAGACTAAGCAGTATGCAGAAGGTTGAGGAAGTGAAGTGTGTGATAAGAGTGATTCCCATATGGGCCGCAGGCATTATCTACTATGTGGCTTTAGTCCAGCAGAGCACCTATGTAGTGTTTCAGGCCCTTCAATCTGACCGGCGCCTTGGCTCTACCGGCTTCAAGATCCCAGCTGCATCTTACACTGTATTTACCATGCTTAGTCTCACCATCTGGATACCTATATATGACCAAATTATTGTCCCTCTCCTCCGAAGGTTAACTGGAAAAGAAGTTGGCATCACATTGCTTCAGAAGATGGGTATTGGCATGGTTCTTGCAGTAATCACCATGATTTTATCTGCCTTGGTTGAAGAGCGGAGGAGAACTCTGGCTCTTACAAAGGCAACAGTGGGGATAGAAGCAAGAAGAGGTGCCATTTCTTCCTTGTCAGGCATGTGGTTGGTGCCTCAGCTCACACTAATAGGAATTTCTGAAGGATTAACTATTATTGGCCAAGTAGAATTCTTCTACAAGCAATTCCCAGAAAACATGAGAAGCTTTGCTGGAGCTTTCTTGTTTTGTGGAATCGCATTTTCAAATTATTTGAGTAGTTTTTTGGTATCAATAGTTCACCAGAGCACCGGTGGGACTGCAACAGGCAACTGGTTGCCAGAAGATCTTAACAAGGGAAGATTGGATTACTTTTACTACTTGGTTGCTGCTTTGGGGATGGGTTCCACTTTATCTTCTCCCTTGGAGCGAGGCAGTCTTTTGTGGGCAACCATGGAGAAGAATGAGAAAGCTGGTACAGCTGACGAGCCTAATTTTGAGTACAGAGGACTTAAAGCTATGCCCTTTATCATAGGGAATGAGACTTTTGAGAACTTGGGGACCGTGGGCACGTCGTCCAACCTTTTGGTTTATCTGACTGCTGTCTTCAACATGAAGAGCATCACAGCTGTAACTCTTATCAACATTTTCTATGGTACCACCAACCTTGGCACCTTGGTAGGAGCTTTCCTCTGCGATACCTACTTTGGCCGCTATAAGACATTGGGATTTGCTACAGTTGCCTCTTTTATGGGGATGCTTGTAATTACACTAACAGCACTGATCTCCAAGCTGCATCCTCCCCATTGTGAAATAGAACAGACTGGCACATGCATTGGCCCAACATCATGGCAAATTGCATTTCTTCTACTTGGATTTGGACTCCTAGTAATCGGAGCCAGTGGCATCCGACCATGTAACTTGGCCTTTGGAGCTGACCAATTCAATCCCATAACTGAATCAGGGAAAAGGGGACTCAGTAGTTTCTTCAATTGGTGGTACTTTACTGGTACTGTTGCCATGATGATATCCTTGACACTGGTCATCTATGTCCAGTCAGATGTGAGCTGGGCTCTGGGCTTAGCAATCCCTACTTTTCTGATGTTATTAGCATGTGTACTCTTCTTCATGGGTACGAGAATATATGTGAAATTGGAACCCAAGGGTAGCCCCCTGAAGAGTGTGGTGCAGGTCATAGTGGCTGCAGCCAGGAAGAGGCAATTGAAGTTACCGGAGCAACCATGGCTCACCCTTTTTAGCCATGTTCCCTCCAATTCTATCAACTCCAAGCTTCCTTACACAGATCAATTCAGATTCCTCGATAAAGGTGCAATAATAACCCCTGAAGACCAAATCAACTCAGAAGGGTTAGCAGCTGATCCATGGAGACTTTCCAGTATTCAGCAAGTGGAAGAAGTGAAATGTTTGATGAGAGTGATACCCATATGGGCCTCAGCCATTATCTACTATGTTGCTCTAGCTCAGCAGCAAACCTATACAGTTTTCCAATCCCTTCAATCTGACAGGCATCTTGGTCACAGCAATTTCAAGATCCCGGCTGCATCTTACAGTATCTTCTCTATGTTAGGCCTCATTATATGGATACCTATCTATGACCGAATTATGGTCCCATTACTTCAAAGGTTCACAGGAAAAGAAGGCGGCATCACAGTCCTCCAAAAGATGGGTGTTGGCATGTTTCTCTCTATAGTAACCATGCTTGTATCTGCCTTTGTAGAACATCAGAGAAGGACTTTGGCGCTTTGTGCGATTTCTTCCATGTCCGGTTTGTGGTTTATACCTCAGCTGACACTAGTGGGAGTCTCCGAGGCATTTACTGTAATTGCCCAAGTTGAATTCTTCTATAAGCAGTTCCCAGAAAGCATGAGAAGCGTTGGTGGATCTTTCTCATTTCTTGGTGTGGCAGTGTCAAGTTATTTGAGCAGCTTCTTGGTATCGACAGTTCACCGGATGACAGCTGGGGCTGCATCAGGAAACTGGTTGCCGGAAGACCTTAACAAGGGTAGATTGGATTACTTTTATTACCTCGTTGCTGCTTTGGGAGTCATCAATTTGGGCTACTTCCTATTATGTGCAAAGTGGTACAAGTACAAAGGGAGTGCTTGCAGCACCCAAGAAGTGCCTATGGAGAGAGTTGAATCAGAGAAACCTCTTAGAATTAGTTCTTTACGAGAAACTATGGAGAAAAATGAGGAGATTGATACAGCAGATGAACCTGAAGTTAACTACAGAGGAGTGAAAGCCATGCCCTATATCATAGGGAATGAGACATTTGAGAAGCTGGGAGCCATTGGAACCTTGTCTAACCTCTTGCTTTACGTAACTGTTGTCTTCAACATGAAGAGTATCACTGCTACAACTCTTATCAATATCTTCAATGGCACCACCAACTTTGCTACCTTGCCAGGAGCTTTCCTCTCTGATACATATTTTGGTCGATATAAAACCTTGGGTTTCGCTTCAATATCCTCTTTCATGGGCTTGCTTGTAATAGCACTTACGGCTGCAATACCAAACCTGCATCCTCCTGAATGTGGAAAAGCAAGCAGATGCATTGGGGCAACGGCTTGGCAAATGGCTTTTCTGCTTACTGGTTTTGGACTGCTAGTGATAGGAGCTGGTGGCATCCGTCCATGTAACTTGGCCTTTGGAGCTGATCAATTCAATCCCAAAACTGAATCTGGGAAGAGGGGAATCGACAGCTTTTTCAATTGGTACTTCTTCACCTTAACTTTTGCCCAGATGGTATCACTAACAGCCATTGTTTATGTGCAATCCAAAGTGAGCTGGGGTATCGGTCTAGGTATTCCTGCACTTCTAATGCTGTTATCATGTGTAGTCTTCTTCATGGGTACAAAAATATATGTGAAAGTCAAACCCACAGGTAGTCCCATGACTAGTGTGGCGCAGGTCATAGTGGTCGCAGTCAAGAAGAGGCGATTAAAGCTACCAGAACAACCTTGGCTCTCCCTTTTCAGCTATATTCCCCCCAATTCTATCAACTCCAAGCTTCCTTACACAGATCAATTCAGATTTCTAGACAAAGCAGCAGTACTTAGCCCTGAAGACCAACTCAACCCAGATGGATCAGCAGCTTATCCATGGAGGCTTTGCAGCATGCAACAAGTGGAAGAAGTAAAATGCATAATGAGGGTGATACCCATATGGTCCTCAGCGATTATATACCATTGTGCTATTGTCCAACAGCATACTTATGCAGTCTTCCAAGCCCTTCAATCCAATAGGTATGTTGGCAACAGCAAGTTCCAGATCCCTGCTGCATCTTACACAGTCTTCTCCATGCTAAGCCTCACTATCTGGGTACCTATCTATGACCGAATTGTCGTCCCTTTCCTACGAAGAATCACAGGAAAAGAAGCCGGAATCACAATTCTTCAAAGGATAGGCATCGGCATATTTCTCTCCGTACTCACATCTCTTGTATCTGCCTTAGTTGAAGAGTGGAGAAGGACAAGGCCAATAATAGGAGTATATCCAAGAAGAGGTGGTATTTCATCCATGTCAGGCTTCTGGTTGATTCCTCAGCTCACGCTAGCTGGACTGGCAGAAGCATTTACTGCCATTGGGCAAGTCGAATTCTACTACAAGCAGTTCCCAGAAAACATGAGAAGCATAGCAGGCTCCTTCTTCTTTTGCGGCATGGCAGCATCGAGTTATGTGAGTGGCCTCTTGGTATCAATAGTTCACCGGACAACAGCTGGGGCAAAAACTGGAAACTGGCTGCCAGAAGACCTTAACAAGGGTAGATTAGATTACTTCTATTACCTAGTTGCCTCTTTGGGGGTTATAAATTTAGGCTACTTTCTAGTATGTGCTAAGTGGTATACATACAAAGGAAGTTACCAGCAGCACCCTTGA	5145	0.4494	MENNEKVVATDEPKTKHRGIKAMPFVIGNETFEKLGTIGTSTNLLVYLTTVFNMKSITATTFVNVFNGSTNFATLIGAFLCDTYFGRYTTLGFASISSFLGMLVITLTAAVQKMHPPHCGTTDTGTCIGPTAGQMAFLLSGFGLLVIGAAGIRPCNLAFGADQFNPETESGKRGISSFFNWYYFTYTFAMMVSLTVIVYVQSDVSWSLGLAIPTLLMLLSCALFFMGTRIYVKVKPEGSPLKNVAQVIVAAVKKRRLELPGQPWLSLFNHIPANSINSKLPHTDQFRFLSKGAILTPEVQINSDGSAANPWRLSSMQKVEEVKCVIRVIPIWAAGIIYYVALVQQSTYVVFQALQSDRRLGSTGFKIPAASYTVFTMLSLTIWIPIYDQIIVPLLRRLTGKEVGITLLQKMGIGMVLAVITMILSALVEERRRTLALTKATVGIEARRGAISSLSGMWLVPQLTLIGISEGLTIIGQVEFFYKQFPENMRSFAGAFLFCGIAFSNYLSSFLVSIVHQSTGGTATGNWLPEDLNKGRLDYFYYLVAALGMGSTLSSPLERGSLLWATMEKNEKAGTADEPNFEYRGLKAMPFIIGNETFENLGTVGTSSNLLVYLTAVFNMKSITAVTLINIFYGTTNLGTLVGAFLCDTYFGRYKTLGFATVASFMGMLVITLTALISKLHPPHCEIEQTGTCIGPTSWQIAFLLLGFGLLVIGASGIRPCNLAFGADQFNPITESGKRGLSSFFNWWYFTGTVAMMISLTLVIYVQSDVSWALGLAIPTFLMLLACVLFFMGTRIYVKLEPKGSPLKSVVQVIVAAARKRQLKLPEQPWLTLFSHVPSNSINSKLPYTDQFRFLDKGAIITPEDQINSEGLAADPWRLSSIQQVEEVKCLMRVIPIWASAIIYYVALAQQQTYTVFQSLQSDRHLGHSNFKIPAASYSIFSMLGLIIWIPIYDRIMVPLLQRFTGKEGGITVLQKMGVGMFLSIVTMLVSAFVEHQRRTLALCAISSMSGLWFIPQLTLVGVSEAFTVIAQVEFFYKQFPESMRSVGGSFSFLGVAVSSYLSSFLVSTVHRMTAGAASGNWLPEDLNKGRLDYFYYLVAALGVINLGYFLLCAKWYKYKGSACSTQEVPMERVESEKPLRISSLRETMEKNEEIDTADEPEVNYRGVKAMPYIIGNETFEKLGAIGTLSNLLLYVTVVFNMKSITATTLINIFNGTTNFATLPGAFLSDTYFGRYKTLGFASISSFMGLLVIALTAAIPNLHPPECGKASRCIGATAWQMAFLLTGFGLLVIGAGGIRPCNLAFGADQFNPKTESGKRGIDSFFNWYFFTLTFAQMVSLTAIVYVQSKVSWGIGLGIPALLMLLSCVVFFMGTKIYVKVKPTGSPMTSVAQVIVVAVKKRRLKLPEQPWLSLFSYIPPNSINSKLPYTDQFRFLDKAAVLSPEDQLNPDGSAAYPWRLCSMQQVEEVKCIMRVIPIWSSAIIYHCAIVQQHTYAVFQALQSNRYVGNSKFQIPAASYTVFSMLSLTIWVPIYDRIVVPFLRRITGKEAGITILQRIGIGIFLSVLTSLVSALVEEWRRTRPIIGVYPRRGGISSMSGFWLIPQLTLAGLAEAFTAIGQVEFYYKQFPENMRSIAGSFFFCGMAASSYVSGLLVSIVHRTTAGAKTGNWLPEDLNKGRLDYFYYLVASLGVINLGYFLVCAKWYTYKGSYQQHP*	1715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0541	1714	SUPERFAMILY	MFS general substrate transporter	40	519	IPR036259	-
	Vvi17g0541	1714	Gene3D	MFS general substrate transporter like domains	565	1125	IPR036259	-
	Vvi17g0541	1714	Gene3D	MFS general substrate transporter like domains	1142	1712	IPR036259	-
	Vvi17g0541	1714	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	1167	1706	-	-
	Vvi17g0541	1714	SUPERFAMILY	MFS general substrate transporter	602	1118	IPR036259	-
	Vvi17g0541	1714	CDD	MFS_NPF1_2	1171	1704	-	-
	Vvi17g0541	1714	SUPERFAMILY	MFS general substrate transporter	1185	1703	IPR036259	-
	Vvi17g0541	1714	CDD	MFS_NPF1_2	23	548	-	-
	Vvi17g0541	1714	Gene3D	MFS general substrate transporter like domains	2	554	IPR036259	-
	Vvi17g0541	1714	Pfam	POT family	1237	1668	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Vvi17g0541	1714	Pfam	POT family	657	1077	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Vvi17g0541	1714	Pfam	POT family	90	523	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Vvi17g0541	1714	CDD	MFS_NPF1_2	589	1117	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0541	Vvi-Chr17	6052070	6063484	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0541	11	547	Organic Solute Cotransporters	AT5G62680	60.708	0.0	716

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0541	-		-	vvi:109124329	1143.64