Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0537 ATGTTGATGTTCTTTTCTTATTATTTTGAAGGGGTGGAATTGGGTAAGGTATTACTCTATTTGCAGATTATGTTGCGAACAAAGCAGATTGGTCCCCTTTCCAACTCTGCTAGGTCCATTTTAATTAGTGGAACACGATCCAGTACACCAGATGGAAACTCATGCCCTTGCTCTGAAGATGAAACTTGTGTTTCAACAAAGCAGCATGCAAGAAATGAAGTTTTGATCATGCAGAAGCAAACCACCTTGGCATCCAAAACTGCAGCAAGAGTTGGACCCCTGTTTTTGGGTGATGCAGTAAAAGTAGTGGGTTCTCAAAAAGTTGAGAGTGTTGAGCATGCAACTTCTCTAGCACAAGTTGTAGCTGCTCCTAGATCTGTGGTGGGATCAGATTGTGTTAGTTATGTCAGTGACAATGTTGGTGTTAATAATGATGCGGTGCATGCGCCTCCTATCTCAGATCAGTTTATTAGGGCAGGTATTGTAGCAGTAAATTTTCTGTCTGATTTAGTAAATTATAAGATTCCTATGTCAGATGGGAGTGGAATGCTTAAGCTGCCACAGAACTGTATGGTTGACCCCACCAAGCCTCTTTCTAAGATCAAATCAACAAATATAAAACCCATTAGAAAAGGGAAATTTTCAAAAGTTCGTGCAGAGTCGTCTGCCAATATAGCAGCAGCCTCAAACTCTACAAGTAGTTATCACAGTACAAGAGGAAAAGGTGATAAATCGGGCTCAGTTAAAGGTTGCAGTCATGTGGGAGATACCTGGACAAGGAATACAGTAGATACTCGAAGTCTGTCTTCAGATACTCACAATAAGAGGTCTATGCCACAGAAGTCAAAAGCTTATTCAAACTACTCAACATCGAATTCCAATTTCAATTCCAATGTTCGAAATTCAGAACCGAGGTTTGTGGGAGGCATCGCAGGGGGGTTCAGCAAGCCCCTAAGAGATACAAAAATGATAGGAATTGCTCCAGTGTCTAGGCAGTTTGGAAGCTCTGGGCATGTTGTGGAAAATGTTTCTCGCATATTGCGACAGCTGAGTTGGGGACCTGCAGCAGAAGAGGCTCTTAGAAATCTCAACTGTTTGATGGATGCATATCAAGCAAACCAGGTTCTAAAGCAGATTCAAGACCATCCGGTTGCTCTTGGTTTCTTTTATTGGCTGAAAAGACAAACTGGGTTCAAGCATGATGGGCATACTTACACCACAATGGTTGGCATCCTGGGTCGTGCTAGACAATTTGGTGCGATTAACAAATTGCTGGCTGAGATGGTCAGGGATGGATGCCAGCCAAATGTGGTGACATATAATCGATTGATTCACAGTTATGGCCGGGCAAACTATTTGAATGAAGCAGTCAGCGTTTTTGATAGGATGCAGGAAGCAGGATGTCAACCTGACCGTGTCACCTATTGCACACTCATCGACATCCATGCGAAAGCAGGGTTTCTGGATGTTGCCTTGCACATGTATCAAAAGATGCAAGAGGCTCACCTTTCTCCTGACACATTCACCTACAGTGTTATAATCAACTGCCTGGGAAAAGCTGGCCATTTGACTTCTGCTCACAAGCTATTCTGCGAGATGGTTGATCAGGGCTGTGTTCCAAACTTGGTTACTTACAATATTATGATTGCTTTGCAAGCCAAGGCAAGGAACTATCCAACTGCATTAGAACTTTACCGTGACATGCAGAATGCAGGATTTCAACCCGACAAAGTAACTTACAGCATAGTAATGGAGGTGCTTGGCCATTGTGGGCATCTTGAGGAGGCAGAAGCAATTTTTACTGAGATGAAAAGGAAGAATTGGGTGCCAGATGAACCTGTTTATGGTCTTTTAGTAGACTTGTGGGGAAAGGTTGGGAATGTTGAGAAGTCTTGGGAGTGGTATCAAGCCATGCTCAATGCTGGGTTGTGCCCTAATGTGCCCACTTGCAATTCCCTGCTCAGTGCGTTCCTTAGGGTGCATCGGCTTTCAGATGCATACAACTTGCTGCAGAGCATGTTGCGATTAGGTCTCCAGCCTTCTTTGCAAACTTATACCTTGCTTCTCAGTTGTTGTACTGAAGCTCGGTCATCATTTGACATGGGATTTTGTGGTGAGCTTATGGCAGTGACGGGTCACCCTGCACACATGTTCCTACTGTCCATGCCAGCTGCAGGACCTGATGGACAGAATGTTCGAGATCATGTGAGCAAGTTCCTGGATCTGATGCACAGCGAGGATAGGGAGAGTAAGAGGGGACTTGTTGATGCAGTCGTGGATTTTCTCCACAAGTCAGGGCTCAAGGAGGAGGCTGGTTCTGTGTGGGAAGTTGCTGCACAGAAGAATGTCTATCCAGACGCGGTTAGAGAGAAAAGCTCATGTTATTGGCTCATCAATCTGCACTTCATGTCAGATGGGACTGCTGTGACGGCACTCTCACGGACACTTGCCTGGTTCCACCGGGAGATGCTTGTATCTGGAACTGTTCCCAGCCGGATTGATATAGTGACAGGATGGGGTCGGCGGAGCAGGGTGACAGGAGCTTCTCTGGTGAGGCAGGCAGTGCAAGAACTGCTGCATATATTCAGCTTCCCCTTTTTCACTGAAAATGGCAACTCCGGTTGTTTTGTCGGACGAGGGGAGCCCCTTGGCAGATGGCTACTCCAATCCTATGTCGAGCGCATGCATTTACTGTAG 2697 0.4542 MLMFFSYYFEGVELGKVLLYLQIMLRTKQIGPLSNSARSILISGTRSSTPDGNSCPCSEDETCVSTKQHARNEVLIMQKQTTLASKTAARVGPLFLGDAVKVVGSQKVESVEHATSLAQVVAAPRSVVGSDCVSYVSDNVGVNNDAVHAPPISDQFIRAGIVAVNFLSDLVNYKIPMSDGSGMLKLPQNCMVDPTKPLSKIKSTNIKPIRKGKFSKVRAESSANIAAASNSTSSYHSTRGKGDKSGSVKGCSHVGDTWTRNTVDTRSLSSDTHNKRSMPQKSKAYSNYSTSNSNFNSNVRNSEPRFVGGIAGGFSKPLRDTKMIGIAPVSRQFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDMGFCGELMAVTGHPAHMFLLSMPAAGPDGQNVRDHVSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCYWLINLHFMSDGTAVTALSRTLAWFHREMLVSGTVPSRIDIVTGWGRRSRVTGASLVRQAVQELLHIFSFPFFTENGNSGCFVGRGEPLGRWLLQSYVERMHLL* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0537 898 MobiDBLite consensus disorder prediction 225 302 - -
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 403 437 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 473 507 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 543 576 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 508 541 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 578 612 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 649 681 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 438 471 IPR002885 -
Vvi17g0537 898 NCBIfam pentatricopeptide repeat 614 647 IPR002885 -
Vvi17g0537 898 PANTHER OS03G0856100 PROTEIN 54 898 - -
Vvi17g0537 898 MobiDBLite consensus disorder prediction 252 302 - -
Vvi17g0537 898 MobiDBLite consensus disorder prediction 225 241 - -
Vvi17g0537 898 SUPERFAMILY SMR domain-like 796 876 IPR036063 -
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Vvi17g0537 898 SMART SMR_2 795 887 IPR002625 -
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi17g0537 898 ProSiteProfiles Smr domain profile. 798 881 IPR002625 -
Vvi17g0537 898 Gene3D - 774 877 IPR036063 -
Vvi17g0537 898 Gene3D Tetratricopeptide repeat domain 355 484 IPR011990 GO:0005515
Vvi17g0537 898 Gene3D Tetratricopeptide repeat domain 485 585 IPR011990 GO:0005515
Vvi17g0537 898 Gene3D Tetratricopeptide repeat domain 586 701 IPR011990 GO:0005515
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi17g0537 898 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vvi17g0537 898 Pfam PPR repeat family 540 586 IPR002885 -
Vvi17g0537 898 Pfam PPR repeat family 435 481 IPR002885 -
Vvi17g0537 898 Pfam PPR repeat family 645 692 IPR002885 -
Vvi17g0537 898 Pfam PPR repeat 503 534 IPR002885 -
Vvi17g0537 898 Pfam PPR repeat 614 642 IPR002885 -
Vvi17g0537 898 Pfam PPR repeat 404 433 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0537 Vvi-Chr17 6000719 6005645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0537 487 788 Glycosyltransferase AT1G05670 23.279 1.07e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0537 - - vvi:100251827 1735.31