Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0530 ATGATGGGTGGGGTTCTTACCATTACCCTCCTCTTCTGTACCTTGCTACTTCTTCTTGATCCTTCACTATCACATCCTTTATGTACTGATTCAAGAGCACCTTTTACCCTGAAGACCCCCTTGAACTTTTGTCCTTACAATGGAAGTGTATGCTGCAACTCTACTGAAGACTTGCAATTGAGGAAGCAATTTCAAGCAATGAACATCTCTCATCAAGGCTGTGCTTCTCTTCTGAAATCAATCCTTTGTGCGAGGTGTGACCAATTCTCAGCACAACTATTTAGAGGTGATTCCATATCCCAACCTGTTCCTGTGCTTTGCAACTCTACTTTTCCACTGAATACATCTCAGTCTAGCTCGGCATTGAATGGCTTCTGCTCAGAAGTATGGGATACGTGTCAAAATGTATCTATATTGAATTCTCCCTTTGCAACCTCACTGCAAGGTCAATCTGGAGTAACAGCTGGTTCCAATTTTACCAAACTGATTGAACTCTGGCAGTCAAAAACTGATTTCTGTAATGCATTTGGTGGAGCTTCTATTAATGGATCACTATGCTTTGATGGTGGACCAGTTGTACTGAATAACACTGGCACTCCAACCCCTCCAAATGGATTGTGCCTAGAGAAAATTGGAAATGGATCTTACATCAATATGGTTGCCCATCCTGATGGGTCCAACCGTGCCTTCTTCTCTGACCAACCTGGTAAGATTTGGTTGGCAACTATACCCAAAGAGGGAGCAGGAGGAGAACTGGAACTTGATGAAGCCAATCCCTTTCTAGATCTAACTGATGAAGTTCATTTTGATGCTGAATTTGGAATGATGGGCATGGCGTTTCATCCAAATTTTGTGCAGAATGGCCGCTTCTTTGCTTCATTCAATTGTGATAAGATTAAGTGGCCAAGATGTTCAGGAAGATGTTCATGTAATTCTGAAGCGAACTGTGATCCTTCAAAGCTACAGCCTGATAACAATGCCAGTCCATGCCAATATCATAGTATTATCGCAGAGTTCACCACGAATGGTACCGCATTGCAGGCTTCCTTGGCAACAGTTGCCAAACCATCCGAAGTGAGAAGGATATTTACTATGGGCCTTCCATTTACATCTCATCATGGAGGACAAATTCTCTTTGGACCAGATGGGTATTTGTACTTTATGATGGGGGATGGTGGAGGGTCTGGTGATCCTTACAATTTTGCCCAAAACAAGAAATCAGTTCTTGGAAAGATTATGAGGCTTGACATCGACATCATATCAAGTGCAGCAGAAATAAGTAATCTTAGCCTATGGGGAAACTACTCTATTCCAAAGGATAATCCATTCACTGAAGATGAGGGATTACTTCCAGAAATATGGGCCATGGGATTAAGAAATCCTTGGCGTTGCAGTTTTGACTCGGAGAGGCCTTCTTACTTTATGTGTGCAGATGCTGGACAGGATGAATATGAGGAAGTAGATATCATCACCAAGGATGGAAACTATGGCTGGCGTGTTTATGAGGGCCCCAATCTATACACTCCTCGAGAATCACCTGGAGGAAATACATCTGCAAATTCCATAAATGCAATTTTTCCGGTGATGGGTTACTATCATGATGTAAACGTGAATGAAGGATCAGCGTCTATCACTGGGGGCTATTTCTATCGATCAATGACTGATCCATGCATGTATGGAAGGTACTTGTTTGGAGATTTATATGCCCATGCCATATGGGCTGGCACTGAAAGCCCTGAAAATAGTGGGAACTTCACCATGAGCCAGATTCCTTTCAGTTGTGCTCATGACTCTCCTATACAATGCAGTTCTGTGCCAGGATCTTCTCTTCCGGCTTTGGGTTACATTTTCTCATTTGGGGAGGACAACAATAAGGATATTTTTCTCCTAACAAGCAGTGGCGTATATAGAGTTGTTCGTCCAAGTCGCTGCAATTACACTTGCTCAAAAGAAAATGCAACTGCTACTGCAAGCCCAAGTCCTGCCCCATCCTCACCTTCTTCACAGGTAAGTTGGTTGAATCACCCATATAAGATTTTTTTGCTACTATTCCCATCTCTGTCGTTTCTTGTGCTGTTTTCTGCCTAG 2088 0.4277 MMGGVLTITLLFCTLLLLLDPSLSHPLCTDSRAPFTLKTPLNFCPYNGSVCCNSTEDLQLRKQFQAMNISHQGCASLLKSILCARCDQFSAQLFRGDSISQPVPVLCNSTFPLNTSQSSSALNGFCSEVWDTCQNVSILNSPFATSLQGQSGVTAGSNFTKLIELWQSKTDFCNAFGGASINGSLCFDGGPVVLNNTGTPTPPNGLCLEKIGNGSYINMVAHPDGSNRAFFSDQPGKIWLATIPKEGAGGELELDEANPFLDLTDEVHFDAEFGMMGMAFHPNFVQNGRFFASFNCDKIKWPRCSGRCSCNSEANCDPSKLQPDNNASPCQYHSIIAEFTTNGTALQASLATVAKPSEVRRIFTMGLPFTSHHGGQILFGPDGYLYFMMGDGGGSGDPYNFAQNKKSVLGKIMRLDIDIISSAAEISNLSLWGNYSIPKDNPFTEDEGLLPEIWAMGLRNPWRCSFDSERPSYFMCADAGQDEYEEVDIITKDGNYGWRVYEGPNLYTPRESPGGNTSANSINAIFPVMGYYHDVNVNEGSASITGGYFYRSMTDPCMYGRYLFGDLYAHAIWAGTESPENSGNFTMSQIPFSCAHDSPIQCSSVPGSSLPALGYIFSFGEDNNKDIFLLTSSGVYRVVRPSRCNYTCSKENATATASPSPAPSSPSSQVSWLNHPYKIFLLLFPSLSFLVLFSA* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0530 695 Gene3D - 211 609 IPR011042 -
Vvi17g0530 695 FunFam HHIP-like 1 210 633 - -
Vvi17g0530 695 Pfam Glucose / Sorbosone dehydrogenase 219 573 IPR012938 -
Vvi17g0530 695 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 211 519 IPR011041 -
Vvi17g0530 695 PANTHER HEDGEHOG-INTERACTING PROTEIN 57 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0530 Vvi-Chr17 5930446 5937342 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0530 - - vvi:100255214 1362.05