Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0528 ATGGATGAACATCAGAGAGTGACTGATGAATTTCGTGGGGCAAAAGTTTGGTGGGCTGCCAGCAAAGTAGTTCCACCCGCACGGTCGTCAGTTTCTTTTTATCCAGAAAAAGAAAAGAGATACTACAAGCTCATATTCCATAAAAAGTACAGGGAGATCATGACTGACAATTACTTGGAGCATCCTATGTGGAGCCATGTGTGGAAGCGGGGTTATCTCCTTTATGGCCCACCAGGAACTGGTAAATCCACCATGATTGCTGCAATGGCTAATCTATTGAGCTATGATGTTTATGATCTTGAGCTTACAGCAGTGAAGGACAACACCGAGCTGAGGAAGCTTTTGATTGAGACAACCAATAAATCTATTATAGTGATTGAAGATATAGATTGCTCGCTTGATCTTACAGGTCAGAGGAAGAAGAAAGAGGAGAAATCCTCTGAAAGCCAGGAGGATGAGAAGGTGAAGGAAATTTCCAGGAAGGACAACAGGGAAGAGAGCAGCAAAGTCACCCTCTCAGGGCTTTTGAATTTCATTGACGGGCTATGGTCTGCTTGTGGAGGGGAGAGGCTAATCGTCTTCACTACAAACTATGTGGAGAAGCTGGACCCCGCACTAATAAGAAGGGGTCGAATGGACAAGCATATTGAGTTCTCCTACTGCAGTTTCAAGGCATTCAAAGTGCTAGCAAATAATTACCTGGGTCTTGAGACACATCCACTGTTTGAAATGATTCAACAGTCAATGGAGGAGACCAATATCACGCCTGCTGATGTTGCAGAGAACCTCATGCCCAAATCCCCAACAGAAGATGCAGAGAAATGTCTTTTAAACCTAATTTGA 843 0.4389 MDEHQRVTDEFRGAKVWWAASKVVPPARSSVSFYPEKEKRYYKLIFHKKYREIMTDNYLEHPMWSHVWKRGYLLYGPPGTGKSTMIAAMANLLSYDVYDLELTAVKDNTELRKLLIETTNKSIIVIEDIDCSLDLTGQRKKKEEKSSESQEDEKVKEISRKDNREESSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIEFSYCSFKAFKVLANNYLGLETHPLFEMIQQSMEETNITPADVAENLMPKSPTEDAEKCLLNLI* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0528 280 ProSitePatterns AAA-protein family signature. 190 209 IPR003960 GO:0005524|GO:0016887
Vvi17g0528 280 PANTHER BCS1 AAA-TYPE ATPASE 67 278 - -
Vvi17g0528 280 Pfam ATPase family associated with various cellular activities (AAA) 73 219 IPR003959 GO:0005524|GO:0016887
Vvi17g0528 280 MobiDBLite consensus disorder prediction 140 163 - -
Vvi17g0528 280 Gene3D - 39 215 IPR027417 -
Vvi17g0528 280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 266 IPR027417 -
Vvi17g0528 280 Gene3D - 216 278 - -
Vvi17g0528 280 SMART AAA_5 68 222 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0528 Vvi-Chr17 5872406 5873462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0528 70 222 Calmodulin-binding Proteins AT3G56690 24.845 4.60e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0528 - - pvy:116111076 417.927