Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0527 ATGAAGAAGAGAGGCGAATTGGACGTGTTCGTGTCTGTCAGCAGGAAGAGGGCGGTTCAACTGTTGGTGGGTGTGGGGCTTTTGTACGTGATCTTGGTGGGTTTGGAGATTCCATTCGTGTTCAGAACTGGGTTCGGCGCTGTTTCTCATGAGGGCCTCAATGGCTTGATGGGCGACGCATTGCCTCGCTCGTTTCAGCTTGCGAGCGAAGAGGATATGGAAGAAAGGGCCGCCCCAACCCGCCCACTCCAAGTCCCCTTTAGGGTTTCTCAGGGTTTAGCCCCACAGGGCACAAGGCAACTCACCGAGTACAGTGGGGTCTCGGGCTTGAAATTGGGCCATTTGGACGTGAATGCCAGTGGAAGAGATGGATTTTCAGAGCTGGAGAAGACAGCCAAGGTGGCGTGGGACATAGGAAAGAAACTCTGGGCCGACCTCCAATCGGGGAAAATTCAAACCGACATCAACAAGAATGGGGATGCTCGACCGGAGTCGTGTGCGCACTCGGTTGCACTCTCAGGGCCTGAATTCTTAAAACGAGGAAATATCATGGTGCTGCCGTGTGGGTTAACGTTGGGATCGCACCTTACCGTTGTGGGAAAACCGAGGTCGGCACACCCAGAACACGACCCAAAGATATCTCTGCTGAGGGATGGGGATGAATCGGTGATGGTTTCGCAGTTTATCTTGGAGTTGCAGGGGTTGAAGACGGTGGACGGTGAGGACCCACCGAGGATCTTGCATTTGAATCCAAGGATAAAGGGGGATTGGAGTAGGAAGCCTGTTATAGAGCAAAATACTTGTTATAGGATGCAGTGGGGAACGGCCCTTCGATGCGAAGGGTGGAAATCTAAGGCTGACGAGGAAACTGTTGATGGTCTGGCGAAATGTGAGAAGTGGATCCGTGATGATGATGATCACTCAGAGTCATCCAAGTCTACATGGTGGTTGAACAGGCTGATAGGCCGAACAAAGAAAGTGACAGTAGACTGGTCATTCCCTTTTGAAGAGGAAAAACTATTTGTGCTAACTATTAGTGCTGGCTTGGAGGGATACCACATCAGTGTCGATGGGAGGCATATCACTTCTTTTCCTTATCGCACAGGTTTTGCTCTTGAGGATGCCACCGGGTTATCTTTGACTGGGGACATTGATGTACATGCCATATTTGCTGCTTCTTTGCCCACATCACATCCAAATTATGCACCACAGAGGCATCTTGAGATGTCAAGTATATGGAAGGCACCATCACTTCCTAATGGACCTGTAGAACTTTTCATTGGTATTCTTTCTGCAGGCAACCATTTTGCCGAACGGATGGCTGTGAGGAAGTCTTGGATGCAACACAAGTTCATTAGATCTTCAAATGTTGTCGCTCGTTTCTTTGTAGCACTGCATGCAAGAAAAGAAGTGAATGTGGAGTTAAAGAAAGAAGCAGAATATTTTGGTGATATAGTTATGGTGCCTTACATGGATAATTATGACCTTGTTGTTCTGAAAACACTCGCGATTAGTGAATATGGGGTTCACACAGTATCTGCAAAGTATATAATGAAATGTGACGATGACACATTTGTTAGAGTGGATGCGGTACTTGATGAAGCAAGGAAAGTACCTGATGGTAGTAGCTTGTATGTCGGAAACATGAATTACTACCATAAGCCCTTGCGCTATGGTAAATGGGCGGTGACATATGAGGAGTGGCCTGAAGAAGATTATCCGCCCTATGCAAATGGGCCAGGCTACATTTTATCGTATGATGTTGCACACTTCATTGTAAATGAGTTTGAGAAACACAAATTAAGGCTGTTTAAGATGGAGGATGTGAGCATGGGGATGTGGGTAGGGCAGTTCAACAGCTCAAGATCAGTGGAATATCGACACAGCTTGAAATTCTGTCAGTTTGGATGCATAGAAGAGTATTACACAGCACATTACCAGTCTCCAAGGCAGATGATCTGCTTGTGGGAAAAATTACAACAAAATGGAAGGCCACAGTGCTGCAACATGAGATGA 2016 0.4717 MKKRGELDVFVSVSRKRAVQLLVGVGLLYVILVGLEIPFVFRTGFGAVSHEGLNGLMGDALPRSFQLASEEDMEERAAPTRPLQVPFRVSQGLAPQGTRQLTEYSGVSGLKLGHLDVNASGRDGFSELEKTAKVAWDIGKKLWADLQSGKIQTDINKNGDARPESCAHSVALSGPEFLKRGNIMVLPCGLTLGSHLTVVGKPRSAHPEHDPKISLLRDGDESVMVSQFILELQGLKTVDGEDPPRILHLNPRIKGDWSRKPVIEQNTCYRMQWGTALRCEGWKSKADEETVDGLAKCEKWIRDDDDHSESSKSTWWLNRLIGRTKKVTVDWSFPFEEEKLFVLTISAGLEGYHISVDGRHITSFPYRTGFALEDATGLSLTGDIDVHAIFAASLPTSHPNYAPQRHLEMSSIWKAPSLPNGPVELFIGILSAGNHFAERMAVRKSWMQHKFIRSSNVVARFFVALHARKEVNVELKKEAEYFGDIVMVPYMDNYDLVVLKTLAISEYGVHTVSAKYIMKCDDDTFVRVDAVLDEARKVPDGSSLYVGNMNYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSYDVAHFIVNEFEKHKLRLFKMEDVSMGMWVGQFNSSRSVEYRHSLKFCQFGCIEEYYTAHYQSPRQMICLWEKLQQNGRPQCCNMR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0527 671 SMART Gal_bind_lectin_2 186 391 IPR001079 GO:0030246
Vvi17g0527 671 Pfam Galactosyltransferase 438 618 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vvi17g0527 671 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 358 619 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vvi17g0527 671 Pfam Galactoside-binding lectin 183 390 IPR001079 GO:0030246
Vvi17g0527 671 FunFam Hydroxyproline O-galactosyltransferase GALT4 181 299 - -
Vvi17g0527 671 FunFam Hydroxyproline O-galactosyltransferase GALT2 306 390 - -
Vvi17g0527 671 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 182 392 IPR001079 GO:0030246
Vvi17g0527 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 184 390 IPR013320 -
Vvi17g0527 671 Gene3D - 304 390 - -
Vvi17g0527 671 CDD GLECT 186 390 IPR001079 GO:0030246
Vvi17g0527 671 Gene3D - 419 664 - -
Vvi17g0527 671 Gene3D - 182 291 - -
Vvi17g0527 671 FunFam Hydroxyproline O-galactosyltransferase 416 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0527 Vvi-Chr17 5866164 5869734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0527 1 671 Glycosyltransferase AT1G74800 63.490 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0527 K20843 - vvi:100253641 1360.51