Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0510 ATGGAGAATAAATTAAGAAAATTATTTTTGGGATTTAGATCTATCATTCACCTCGCCTCCATCACGCTCAAATCACTCCACAGCAGGTTTCTTTTCTATATGGCAATGCAGGAAGCGACTCCTGCCCCTCTTCACTCTGCTGCATTTGTTGGGAATGCCTTTGTGGATCAGTATTATCCCATTCTTCACCAAAACCCGGAATTGCTGTATAAATTTTATCAGGATTCAAGTGTGCTAAGCAGGCCAGATTCGAGTGGTAGTATGACCACAGTAACAACTTTGCAGGCAATCAATGACAAGATCATGTCATTCCATTATGGCGAATATAAGATGGAGATAGAGACTGCAGATGCTCAAGACTCTTACAAGGAAGGGGTGACTGTTCTAGTGACTGGAAGTGTAACTCTGAAAGATAACGTGAAAAGGAAATTTGGTCAATCATTCTTTCTAGCTCCACAGGACAATGGCTACTTTGTCTTAAATGATATTTTTACGTATATCGAGGAAAAGAAATCATTGCAGGAAAATTTTGCACCAGTTGATGGTATCAATGAAACTGCTCCAACAGCTGCCTTGACTCCAGATCCAGAGGCCAATCATGTTCCTGATCATCTTGTGGTAGACCCTGCAACACCATCCTTTGAGGAGGAGGAGGATCTGAATAATGTTGCTGAAGTTTGTGACCCATCAGATAATGAAGAAGGATCGGTTATTGAAGAAGAGGCTGTTGTTGAACCCCCATCTATTTCAAGTGAGAATGAAATTTCTACAGTAGTCGATTCAGCTCCTGCAGCACAAGAGGATGCTCCAAAGAAATCTTATGCATCAATTGTGAAGGTAATGAAAGGCAGTGCAACATCCACTCCAGTCTTTGCTACCAGTACAGTAAGGGCAGCACCTGCAAACATTGATCAACAGTTGGCTGGTTCTGCAAAATCTGCTCCGGCACCAGAGGCATGGACTCCTACTAGTGACAGTGCTCCTGAAAGTAGCAATATTAATGAAGAAGGTTTCTCCATATATGTACGGCATTTGCCTTTAAGTGCAACAGTTCCACAATTGGAAGAGGAGTTCAAAAAATTTGGCCCTATTAAGCAAGATGGCATCCAAGTCAGAAGTAATAAGCAGGGATTCTGTTTCGGCTTTGTTGAGTTTGAATCTTTGAGTTCGATGCAGAGTGCACTTGAGGCATCACCTATCACAATTGGGGATCGTCAAGCTGTCGTCGAGGAAAAAAGAACTACCACTCGTGTTGGCGCTAGTGGTAGAGGCAGATACCCTCCAGGAAGGGGTGGGTTCCGGAATGACAACTTCAGGGGCCGTGGAAACTTTGGTGGTGGCCGGGGCTATGGGCGGAATGAGTCCAGAAATCAGGGTGAGTATTCAGGACGTGCAAGGGGTCCAACTGGACGCAATGGAGAGGCTTATCAGCGGGTTAATCAGAATGGAAGTGGGAAGACTGGGCGCCAAGGTGGGATGGCGTGGAACTCAGCTTCTTCTTGA 1503 0.4464 MENKLRKLFLGFRSIIHLASITLKSLHSRFLFYMAMQEATPAPLHSAAFVGNAFVDQYYPILHQNPELLYKFYQDSSVLSRPDSSGSMTTVTTLQAINDKIMSFHYGEYKMEIETADAQDSYKEGVTVLVTGSVTLKDNVKRKFGQSFFLAPQDNGYFVLNDIFTYIEEKKSLQENFAPVDGINETAPTAALTPDPEANHVPDHLVVDPATPSFEEEEDLNNVAEVCDPSDNEEGSVIEEEAVVEPPSISSENEISTVVDSAPAAQEDAPKKSYASIVKVMKGSATSTPVFATSTVRAAPANIDQQLAGSAKSAPAPEAWTPTSDSAPESSNINEEGFSIYVRHLPLSATVPQLEEEFKKFGPIKQDGIQVRSNKQGFCFGFVEFESLSSMQSALEASPITIGDRQAVVEEKRTTTRVGASGRGRYPPGRGGFRNDNFRGRGNFGGGRGYGRNESRNQGEYSGRARGPTGRNGEAYQRVNQNGSGKTGRQGGMAWNSASS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0510 500 Pfam Nuclear transport factor 2 (NTF2) domain 50 166 IPR002075 -
Vvi17g0510 500 FunFam Ras GTPase-activating protein-binding protein 1 328 453 - -
Vvi17g0510 500 CDD RRM_SF 340 397 - -
Vvi17g0510 500 ProSiteProfiles Nuclear transport factor 2 domain profile. 50 166 IPR018222 -
Vvi17g0510 500 FunFam Nuclear transport factor 2 family protein 40 170 - -
Vvi17g0510 500 SMART rrm1_1 339 410 IPR000504 GO:0003723
Vvi17g0510 500 MobiDBLite consensus disorder prediction 317 331 - -
Vvi17g0510 500 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 46 467 IPR039539 -
Vvi17g0510 500 SUPERFAMILY RNA-binding domain, RBD 328 445 IPR035979 GO:0003676
Vvi17g0510 500 CDD NTF2 46 168 IPR018222 -
Vvi17g0510 500 Gene3D - 318 420 IPR012677 -
Vvi17g0510 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 414 IPR000504 GO:0003723
Vvi17g0510 500 Gene3D - 42 170 - -
Vvi17g0510 500 MobiDBLite consensus disorder prediction 413 500 - -
Vvi17g0510 500 SUPERFAMILY NTF2-like 46 167 IPR032710 -
Vvi17g0510 500 MobiDBLite consensus disorder prediction 474 500 - -
Vvi17g0510 500 MobiDBLite consensus disorder prediction 307 331 - -
Vvi17g0510 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 398 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0510 Vvi-Chr17 5737662 5753340 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0510 K24983 - vvi:100255231 853.588