Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0506 ATGGATTTGGAAGTGGCACCCTGTGATGCAAGCTCTAGTCTCTGTGCCCAAAAGAAGAGAAAGAAGCACAAGCAAAGGCACAATTCCATGGAAAATAATCATACAGATCATGGTCATCGGGAGGGTACTTCTTCAATGGAGAATAGACCCCTTGGTAGTGATTCACCTCAAGAGCCTCCAGATAATAGCAGTGCAAAGCTGGATCTGGAAGCCCAACTTGATTCAGATGTGAAAAGGTTGGAGAAAAACAAAGGCAGAAACAAGCATGAGAAGAGACGTTATTCTCTGAAAGATAAGGCTTTAGGCTATGGTGCTTCAGAAGAGGGTACATCTTTAAAGAACCTATCAATGGAACAAAAGTCTGCAGTTAACACACGCTTAAATTTGGAAAAGACTGAACCTAGTGCAGAAGTGGGTTCATCTCATAAAAAGACTAATAAGGGAAAAAGGTGGAAGAAGAGGCATAATGACTTCAAAATTAATGGTACAGATCATGATCTTCGTGAGGGTGGTCATGTGCCTAGCACAGATTTAACAATTATCAACCATTCTGAAAAAGCGGATGTGAGTTTTATTTCATATCCTAGTTCAATAAAGAACCATGATGACAAAGCTGATGATGATGCTGCTTTGCTTGAAATGAAAAATGATGTTAATATCAATAAGAGGAAGACAAAAATCAAAACCTATGGCAGGAGAAAGACAAGGTTCTCCAATTCCTCAGAAAGTAATTTGGAATCTATGAAGGAAGATGGGAATAAGTTGGCAAGGCTCCGGGTGGAAGATGGTACCTCAGTACATCCTCTGAAAGATATTGCAATGGAGGCAGCCTTTGTTAACTGTTCAGATAGTAAACCTACATCTGAGAAAAGGAAGAAGAACATGGTGAGCAATTTAAAAGATGCTACTGATGAAACTAGTTTTGTAAAGATGCCAGTTATCCCTGCTGGGAACTCTGAACCTGTAAATGGGGTTAAGCTAGATAAGATGAAGGGTGCATTGCAGGATGAGGCTGAGAACGTGGAGGAAGAAACTGAGGTGAAAGAAATAATTCCTTCTTCATCACATTTAGGTGCTATAAAAGATGATGTCAAAATAGTTAACAAAGAGGAGAATCCTCCACATACATCACAATCTCTTCCAGAAAGAGCTGTTAGTTGCCATTCCAGAAAGAAGCTCCTTATACTTGATGTGAATGGATTACTTGCTGATATTGTTCCATATTTTGTTGAAGGATATAAACCGGACATAGTAGTTTCACGGAAATCAGTTTTTAAGAGACCCTTCTGTGATGATTTTCTGCAGTTTTGCTTCGAAAGATTTGATGTTGGTGTTTGGTCATCAAGAACCAAGAAAAATGTGGATATGGTGCTTGAATTTCTTATGGCAGATGCCAGACACAAATTGCTTTTTTGTTGGGATCAATCCCAGTGTACCAATACGGGATTTACTACTCATGAGAATCCGCAGAAGCCCCTGCTTTTAAAAGAACTTAGAAAACTATGGGAAAAGCATGAGCCAAATCTTCGATGGGAAAAGGGAGAGTATAATGAATCAAATACATTGTTGTTAGATGATTCACCATGCAAGGCATTGCTGAATCCTGCATACACAGCAATCTTTCCCTATTCCTATGAGTACAAGGATGTTAAAGATAATATGTTAGCAACCGGAGGCAAGCTTCGGGTTTACCTTGAAGGGTTAGCCATGGCTGATAATGTTCAGAAGTATGTCAAACAAAATCCATTTGGTCAACGGGCTATCACAAAATCGAGTGCAACCTGGACTTACTATAGTAAGGTTGTTAGCAAATACTCATACACACAAGAGGAAGATGGCAGGAATTCTCATGCTTGTCGGCAGTGA 1866 0.396 MDLEVAPCDASSSLCAQKKRKKHKQRHNSMENNHTDHGHREGTSSMENRPLGSDSPQEPPDNSSAKLDLEAQLDSDVKRLEKNKGRNKHEKRRYSLKDKALGYGASEEGTSLKNLSMEQKSAVNTRLNLEKTEPSAEVGSSHKKTNKGKRWKKRHNDFKINGTDHDLREGGHVPSTDLTIINHSEKADVSFISYPSSIKNHDDKADDDAALLEMKNDVNINKRKTKIKTYGRRKTRFSNSSESNLESMKEDGNKLARLRVEDGTSVHPLKDIAMEAAFVNCSDSKPTSEKRKKNMVSNLKDATDETSFVKMPVIPAGNSEPVNGVKLDKMKGALQDEAENVEEETEVKEIIPSSSHLGAIKDDVKIVNKEENPPHTSQSLPERAVSCHSRKKLLILDVNGLLADIVPYFVEGYKPDIVVSRKSVFKRPFCDDFLQFCFERFDVGVWSSRTKKNVDMVLEFLMADARHKLLFCWDQSQCTNTGFTTHENPQKPLLLKELRKLWEKHEPNLRWEKGEYNESNTLLLDDSPCKALLNPAYTAIFPYSYEYKDVKDNMLATGGKLRVYLEGLAMADNVQKYVKQNPFGQRAITKSSATWTYYSKVVSKYSYTQEEDGRNSHACRQ* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0506 621 ProSiteProfiles FCP1 homology domain profile. 387 568 IPR004274 -
Vvi17g0506 621 MobiDBLite consensus disorder prediction 29 44 - -
Vvi17g0506 621 PANTHER DULLARD PROTEIN PHOSPHATASE 195 579 - -
Vvi17g0506 621 Pfam NLI interacting factor-like phosphatase 392 575 IPR004274 -
Vvi17g0506 621 SMART forpap2 390 550 IPR004274 -
Vvi17g0506 621 MobiDBLite consensus disorder prediction 1 96 - -
Vvi17g0506 621 Gene3D - 335 586 IPR023214 -
Vvi17g0506 621 MobiDBLite consensus disorder prediction 46 62 - -
Vvi17g0506 621 FunFam Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 335 584 - -
Vvi17g0506 621 Coils Coil 327 347 - -
Vvi17g0506 621 SUPERFAMILY HAD-like 388 578 IPR036412 -
Vvi17g0506 621 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0506 Vvi-Chr17 5688316 5694057 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0506 - - vvi:100263840 1197.96