Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0505 ATGTCAATTTCCAAAGTTCACTGCTCAGTCACAAATTCAGTGGGAGCTCCTGAATGCCATTTGGACAGTGACTTCGAGAAATCTGCTACTCCCCTCATTGATGATTTAATTCCATCCAGTGCCTCAGCAGCTGCTTCAGGCATTGGTTTTGAAAAGTTTCCTGGTCAAATTATCAAAGGTGCAAGCCCATTCAGACTTCTACAAGACTATGCTTCTGACGACAGTACAGAAAATGGTGATGTGCCATGTGCTGAAGATGTTATCCCTGTAACTGCGTCACCATCAGTCACAGCTGATACTGGTTTGCATAGAGATATTAAATATAATCTGGACTCTGGTCTAGGATCTGAGCGCTCTTGCAGGACTGAGAGGAGTTTTGAGCCATCCTCTGAACCTGAATCACCAGTGGATGTAAAAGAAGTTAAAACATCTATTGCTACCAGAACCACTGATGAAAATGTTTTGATTCATGAAAATGAGGCACCTATTTCCCATGGTGCTTCTGTCAGGGATGGCCATGAAAAAGGTGCTGGTGGTGGTGTTGATATTGTTCCTGAGAGTGGGAAGTCTCAGAAGGAAATGCCTCCACTGAAAATTGATGAGTTTGGGCGTTTGGTCAAAGAAGGTGCTAGTGACAGTGATTCTGATGATTCACGCTATGCTAGGAAACGTGGTAAAAGAGGGAGAAGTAGGAGCCGTAGCCGATCTCCTCCAGATAGGAGGAGGAGGAGGAGTCCACTGAGGAGAAAGGAGAGGCGAAGCAGATCTCGCAGTTGGTCTCCTAAGAAGCGAAGAAGCAGGAGCAAGTCCCCTGCTTTTAGGCGTCTTGGTGAGTATGGTGGGGACAAGATGAAACGGGACAAGGGTCAGATGCCGACCTGCTTTGACTTTGTTCGAGGCAGGTGCTACCGTGGAGCATCATGTCGATATCTGCACCAGGACAGTAGCAATCGTGATGGATCAAGGCTCCATAAGGATAAAGAACAGTATCCTGAAGATCCACCCAATTCAAATAATATTAATTTATGTGAGGGGAATAAGAATATCCCAGTAAAAATATATGCTCAGGAGCATGATGAAAACAAGACCCAACCAGTTCAATTCTCTCAGGATGCAACTGATGGCAGCTTTTGCGCTCCAAAAGATGGGGATGTTAATGACAAAAGAGAGGAAAATTCTGCCAGGGATTCCATGCAAGCTGTTGCTTCAGATCAACATGGTAAATCTGGGAGTTGTGGAGATGCAACTGCTCATGTGCTGGAAATGCAAGAAGTTCAAGAAGGGCCTGCAAAGGCTGCCACTCATGTTCTTGATAATGAGAATTTTCAGGTACCAGAGGAGACCCATCAGCCATTTTCAGTTGACTGTTTTCCCTCTCAATCAGTTACTGTAACTGATGCCGATAACCTGAAGTTAGCTGGTGATACTCCTCAAGGCACACTTTTTTCCTCTGAAAGTAAAGCAATTCAGCAATCTCAAGCCAATCTTTCCATTCCTGCTCTTCAAAATGCGGCTCATGAGTCTCATCATGTAGATGGCTCTTCCATGTCTGGTTCTTCACCTGATCAAATGCCTACAACTTTCTCAAATAAGCTTCCTTCAAGTGAACCTTATGCAAAGAAGATCTCTTCCAATCCTTTGCACCCTGGAGCAAGTTCTACAAGCCAATCGGTCTCAGCTGAAGGTTTTTCATCTCAATCTTTGGCACCTAGGGAGTTATCGTCACCTGGTTCCTCTGCTGTAGATTTCCCACATCATCCTTCCCAGTTGCCTCCTCCGCCTCCATTTATGCAAGGGGTAAATGCCCCACATTTGCCACAGCCTCCAAGGGATTACAACTTGCTGCCACAAACCACAAACTTTCCATTTCAATCTGCCTCAGGCGAAAGTTTTTCAACGTATCAAGCTTCACTATCCAATCAACAGTCTCATTTCTCTATAACACCAAATTCCTCTTGGACTTCCATGCTGCCACCACCACCTCCAGTGTCACATTTTAATGATTCTGCTGTAAATGCAGTGACTGTCACTGCTGGTGTCCCATTGCAATATCAGCAGACTCATCTGCCTCCAAGGAATGAATTTATTTCTCAGAGTTTTGCAACTTCCCATCCGACTAAATTGCCCACTCATTCTCAGCCGGGTGAGTTTCAGCACCGTGCCTACCCTCCTATGCAGGAGCCACATCTACCTCCTTTGCAGATGGAACCAAAGTCTCTTCATTTGGGCAACCCATCAAGCCAACAATTTGGAGGCCCTAGTCTTGTGAGGGAAGATCGCTTTTCTCAGTTTCCAGTGCAGGGTTTAATTCCTTCAAGTTCCTTTGCTCAGGGCAGCATGTATCCTCAACCTATATCTTATTTGAGGGGATCACCAGCGAATAAAGTGCAACCTTTCCCTGTTGAGGATGTTCCTCCAGGTGAAATTCTTAAGTCATCTTCTCAGATTCATACTTTCTCACAGCAGAAGCAACCACCATATGATCTGTCACACTCTACATCTGATGCTTTTTCTGTACATCTGGGTGTGCCTGGCAAGATCAGTTCTTCTATGTCAAGATACCCATCAGATCTCCTGGACAGGAATCAGTCATCTCGTTTGTCAGACTTTGGCGGATCACGAATTTCAGCACACTATAATCCTTATGCATCTACTTTTGAGCAGCCACTTAGCTCCAAATTCAGTTCTAATGTTTTCAGACAAGAGAAGGACACGCCTTATAGCAATAAATATGATATGCCATTCAGCTTGAGCCATGTTCCAGCTGATGAGCCTGGTGTTGGTAATCTTGCATCAAGACAGACAATCTCCTCGCCTAATTCTGCCACTGCTGGTCGACAGGTTTTGTCTAGGTCAGGAGGTGACCAATATGATCCACTTTTTGACAGCATTGAGCCATCTTCAAACTCATTTAGAAAATTTGATCACGTTCAAAAGCTGGAACCTACCATTGATTCTGACATCATGTTAAGACTTGGTGGCTCACATAAGCCATTGGATGTGGAAGAAAACAATAAGCACAAAGAGGTTGAAGCAGTTGCTGTAACTACATCTCTTGAAAATGATGAATATGGTGAAACTGCTGATGCAGAGGTAGGGGCTGTTGAGAATGGTAGCCCAAGTAGTCCGATTGACATAGCAAACACAGCTGCAGGAGAGATTGAGATTGATCAGATTAAGTCGCCAGGGAAGAGCAAGAAAAGGAAGGACTCCAGATCAATGAAGCTTTTCAAAGTTGCCCTTGCAGACTTTGTGAAAGAGGTGCTAAAGCCATCATGGCGACAGGGTAATATGAGCAAAGAGGCATTCAAGACCATTGTCAAAAAGACAGTTGATAAGGTATCTGGAGCTATGAAGAGCCACCAGATACCAAAGTCTCAAGCAAAGATAAATCACTACATTGATTCATCTCAGCGGAAACTGACAAAACTTGTGATGGGGTATGTTGACAAGTATGTCAAAGCATGA 3468 0.4443 MSISKVHCSVTNSVGAPECHLDSDFEKSATPLIDDLIPSSASAAASGIGFEKFPGQIIKGASPFRLLQDYASDDSTENGDVPCAEDVIPVTASPSVTADTGLHRDIKYNLDSGLGSERSCRTERSFEPSSEPESPVDVKEVKTSIATRTTDENVLIHENEAPISHGASVRDGHEKGAGGGVDIVPESGKSQKEMPPLKIDEFGRLVKEGASDSDSDDSRYARKRGKRGRSRSRSRSPPDRRRRRSPLRRKERRSRSRSWSPKKRRSRSKSPAFRRLGEYGGDKMKRDKGQMPTCFDFVRGRCYRGASCRYLHQDSSNRDGSRLHKDKEQYPEDPPNSNNINLCEGNKNIPVKIYAQEHDENKTQPVQFSQDATDGSFCAPKDGDVNDKREENSARDSMQAVASDQHGKSGSCGDATAHVLEMQEVQEGPAKAATHVLDNENFQVPEETHQPFSVDCFPSQSVTVTDADNLKLAGDTPQGTLFSSESKAIQQSQANLSIPALQNAAHESHHVDGSSMSGSSPDQMPTTFSNKLPSSEPYAKKISSNPLHPGASSTSQSVSAEGFSSQSLAPRELSSPGSSAVDFPHHPSQLPPPPPFMQGVNAPHLPQPPRDYNLLPQTTNFPFQSASGESFSTYQASLSNQQSHFSITPNSSWTSMLPPPPPVSHFNDSAVNAVTVTAGVPLQYQQTHLPPRNEFISQSFATSHPTKLPTHSQPGEFQHRAYPPMQEPHLPPLQMEPKSLHLGNPSSQQFGGPSLVREDRFSQFPVQGLIPSSSFAQGSMYPQPISYLRGSPANKVQPFPVEDVPPGEILKSSSQIHTFSQQKQPPYDLSHSTSDAFSVHLGVPGKISSSMSRYPSDLLDRNQSSRLSDFGGSRISAHYNPYASTFEQPLSSKFSSNVFRQEKDTPYSNKYDMPFSLSHVPADEPGVGNLASRQTISSPNSATAGRQVLSRSGGDQYDPLFDSIEPSSNSFRKFDHVQKLEPTIDSDIMLRLGGSHKPLDVEENNKHKEVEAVAVTTSLENDEYGETADAEVGAVENGSPSSPIDIANTAAGEIEIDQIKSPGKSKKRKDSRSMKLFKVALADFVKEVLKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINHYIDSSQRKLTKLVMGYVDKYVKA* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0505 1155 ProSiteProfiles Zinc finger C3H1-type profile. 288 315 IPR000571 GO:0046872
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 931 955 - -
Vvi17g0505 1155 Gene3D - 220 330 - -
Vvi17g0505 1155 SMART c3hfinal6 288 314 IPR000571 GO:0046872
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 481 574 - -
Vvi17g0505 1155 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 24 1154 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 396 410 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 117 138 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 381 395 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 113 290 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 481 610 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 586 602 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 224 270 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 310 344 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 276 290 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 193 223 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 315 332 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 366 412 - -
Vvi17g0505 1155 MobiDBLite consensus disorder prediction 931 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0505 Vvi-Chr17 5669941 5674487 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0505 - - vvi:100246698 2149.78