Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0495 ATGTGGAGATCCTCGACGCCATTAACGTCTCTCCAACTCCGCAGGCTTCTTCTTCGCTGCTTCTCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTAGTACAGTCTTATTGCCTTAGCCCAACTCTCTCCCTAGATCCCTACTGTCTCTGTTCCTCACAACGCCACTTTGTCTCTCCTTCGTTTCCTCTCTCTAGGCGCTTCTCATCCCAACCAAACAACAGTGCCGATGATGATCACTCCCAAATCGCTCAATCTCTCTCTTCTGAACTCCTTAAGGATCCGGATTCAGAGCCTGTTCCCATTATCCAAAGGCTCCAGCTCAGCTTTTCTCACATTACTCCCTCTCCTCCCCTTATCCTCCAAACACTTAATACTTCCCCTGATGCTGGCCGTACAGTTTTAGGGTTTTACAAATGGCTCTCCTCGAACCCAAAATTTGTTCATTCTGATGAAACCATCTCCTTCTTTGTCGATTATTTCGGTCGCCGGAAAGATTTCAAGGCCATCCACGAGGTACTAATGGATGGTCGCAACTTCGCCGGTGCTAAAACCCTAGAGTCGGCAATCGACCGGCTTGTCCGGGCGGGCCGGGCCACGCAGGTGGTTTCCTTCTTTGATCGAATGGAGGTGGATTATGGATTCCGGAGAGACCGAGAATCGCTGACAATGGTTGTTTCGAAGCTTTGCGAACATGGATTTGCCAGTCATGCGGAGAAAGTGGTGAAAAATGTGGCCAATGAGATTTTTCCTAATGAAACGATCTGTGATTTGCTTATTAAGGGGTGGTGTGTTGATGGGAAGCTTGATGAAGCTAGGAGGTTGGCAGAGGAGATGTTTAGAGGAGGGTTTGAAATTGGTACAATGGCCTATAATTCGATTCTGGATTGTATCTGTAAGCTTTGTAGGAAAAAGGATCCATTTCGTCTTGAATCCGAGGCAGAGAAGATTTTGGTGGACATGGATGTTGCTGGGGTTCCACGCAACGTGGAAACTTTTAATGTTTTGATTACTAATTTATGTAAGATTAGGAAGACTGAGGATGCAATGAAGTTGTTTTATAGAATGGGTGAATGGGGATGTTACCCTAATGAAACCACATTTCTTGTTTTGACAAGGAGTTTATATCAGGCAGCAAGGGTAGGAGAGGGTGATGAGATGATTGATAGGATGAAATCTGCTGGGTTCGGGAATGCACTTGATAAGAAGGCATATTATGAGTTTATAAAAATTTTATGTGGGATTGAGAGGATCGATCATGCTATGAGTCTTTTTTCAAAGATGAAGGAGGACGGATGCAAACCCGGGATCAAGACATATGATTTATTGATGGGGAAGTTGTGTGCTCATGGTCGCCTTGATAAAGCAAATGCACTCTTCAGTGAAGCAGTGAATAGAGGGGTACCTGTGGAATCCAAGGCTTATAAGTTGGATCCAAGATTTGTGAAGAAACCCACAGTGGCAAAGAAGGAGAAAAAACGAGAAACATTGCCTGAGAAAATGGCCCGGAAGAGGAGGCGCCTTAGAAAAATCAGACTCAGTTTTGTGAAGAAGCCTAAACGAATGCGGCGAGCATTTTGA 1599 0.4465 MWRSSTPLTSLQLRRLLLRCFSSSSSSSSSSSSSSSSSLVQSYCLSPTLSLDPYCLCSSQRHFVSPSFPLSRRFSSQPNNSADDDHSQIAQSLSSELLKDPDSEPVPIIQRLQLSFSHITPSPPLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKAIHEVLMDGRNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCEHGFASHAEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAYNSILDCICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMKLFYRMGEWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKILCGIERIDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVESKAYKLDPRFVKKPTVAKKEKKRETLPEKMARKRRRLRKIRLSFVKKPKRMRRAF* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0495 532 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 16 482 - -
Vvi17g0495 532 FunFam pentatricopeptide repeat-containing protein PNM1, mitochondrial 312 400 - -
Vvi17g0495 532 Gene3D Tetratricopeptide repeat domain 398 472 IPR011990 GO:0005515
Vvi17g0495 532 Gene3D Tetratricopeptide repeat domain 315 397 IPR011990 GO:0005515
Vvi17g0495 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vvi17g0495 532 FunFam Pentatricopeptide repeat-containing protein PNM1, mitochondrial 169 311 - -
Vvi17g0495 532 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Vvi17g0495 532 NCBIfam pentatricopeptide repeat 413 442 IPR002885 -
Vvi17g0495 532 Pfam PPR repeat family 335 381 IPR002885 -
Vvi17g0495 532 Pfam PPR repeat family 414 454 IPR002885 -
Vvi17g0495 532 Pfam PPR repeat 264 290 IPR002885 -
Vvi17g0495 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Vvi17g0495 532 Gene3D Tetratricopeptide repeat domain 156 314 IPR011990 GO:0005515
Vvi17g0495 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vvi17g0495 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0495 193 505 Miscellaneous Gene Families AT4G11690 27.640 1.27e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0495 - - vvi:100262070 981.859