Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0494 ATGGGCCATGCTTCGCTCAACTCGCAAAGATTTAAGACTTTCGAACAGATCCAAGCCCAAATTTCCTCCCTCTCTCTGTCTTTCCCTCCCAAGTCCCACCTCAGCGATTCCCAGATGGATGAATTGCAAAGGAAAATGGAGCCAAACTTGGAGCAGACACTGCAAGAGGGAAAGCTCTATCGCCAGATCAATGCCTTAATCGTTGCCTATCTTCGCGACTACAATCTCACTCAGGCTGCAAGTGCGGTTGCTTCGGCGACAATGACGCCGTTGAATGTGGATACTCCTCCCTATAAGCTTATTGATTTGGTTGCTAAGGGCCTTGCAGTGGAGAAAGATGAGATGTTAAAAGGAGGGGTTCCTTCCGCTGCATTTCTTGATTCAGGTGCGGTCATGCCTGTGACATATGGTTCAATCCCAGCTCCTCGAACTGTGGCCGTTGATTTTGGTGCTGTGCATGATACAAAAGGCTCATCAAAGAGTTTTCCAAAGCATGAGACTCGGCATGTTTCAGAGCACAAGAACTTAGCCAGATGTGCAAGGTTTAGTCTTGATGGGAGGTTTGTGGCAACTGGGAGTGCAGACATGTCAATTAAGCTTTTTGAGATTTCAAAAATTAAGCAAATGATGTTGCCGGATGCCAATACAAGGGATGGTCCAGTGCGACCTGTCATACGAACATTTTATGACCATATACAGCCAATCAATGATCTGGATTTCCATCCTCAAAGTACTGTACTGATATCTGGGGCCAAGGATCACACCATAAAGTTCTTTGATTTTTCAAAAACAGTAGCAAAGAGGGCATTCAGGGTTATCCAGGATACTCACAATGTGCGGTCTGTATCTTTTCATCCTTCTGGGGATTTTCTTTTGGCAGGGACTGATCATCCAGTTGCACACTTGTATGATGTCAACACTTTTCAGTGTTACCTATCAGCAAATGTCCAAGATTTAGGTATTAGTGCATCCATAAATCAGGTGAGGTATTCATCTAATGGTGACATGTATGTGACAGCTTCCAAAGATGGTGCTATTCGGTTATGGGATGGAGTGACTGCAAATTGTGTGCGATCTATAGTTGGTGCACATGGAACAGCAGAGGCCACCAGTGCAAGTTTTACAAAGGATCAAAGGTTTGTTCTCTCTTGTGGAAAGGATTCTTCTGTGAAGCTTTGGGAAATCGGCTCTGGAAAGTTGGTCAAGCAATATCTTGGAGCTGCACATACACAGCTACGGTGTCAGGCTGTTTTCAATGAAACTGAGGAATTTGTACTATCCATAGATGAACAAAGCAATGAAATTGTTGTCTGGGATGCTCTGACGGCAGAGATAGTGGCAAGGTTGCCTTCCAACCATATTGGTGCGCCCCGTTGGCTTGAGCACTCACCAACAGAGGCTGCTTTTGTTTCCTGTGGAACCGATAGGTCAGTTCGGTTTTGGAAGGAAATTCTCTAG 1458 0.4506 MGHASLNSQRFKTFEQIQAQISSLSLSFPPKSHLSDSQMDELQRKMEPNLEQTLQEGKLYRQINALIVAYLRDYNLTQAASAVASATMTPLNVDTPPYKLIDLVAKGLAVEKDEMLKGGVPSAAFLDSGAVMPVTYGSIPAPRTVAVDFGAVHDTKGSSKSFPKHETRHVSEHKNLARCARFSLDGRFVATGSADMSIKLFEISKIKQMMLPDANTRDGPVRPVIRTFYDHIQPINDLDFHPQSTVLISGAKDHTIKFFDFSKTVAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPVAHLYDVNTFQCYLSANVQDLGISASINQVRYSSNGDMYVTASKDGAIRLWDGVTANCVRSIVGAHGTAEATSASFTKDQRFVLSCGKDSSVKLWEIGSGKLVKQYLGAAHTQLRCQAVFNETEEFVLSIDEQSNEIVVWDALTAEIVARLPSNHIGAPRWLEHSPTEAAFVSCGTDRSVRFWKEIL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0494 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 211 IPR001680 GO:0005515
Vvi17g0494 485 CDD WD40 166 482 - -
Vvi17g0494 485 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 48 483 IPR044633 GO:0005848|GO:0031124
Vvi17g0494 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Vvi17g0494 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 403 IPR001680 GO:0005515
Vvi17g0494 485 SUPERFAMILY WD40 repeat-like 162 482 IPR036322 GO:0005515
Vvi17g0494 485 Pfam WD domain, G-beta repeat 324 350 IPR001680 GO:0005515
Vvi17g0494 485 Pfam WD domain, G-beta repeat 167 201 IPR001680 GO:0005515
Vvi17g0494 485 Pfam WD domain, G-beta repeat 355 393 IPR001680 GO:0005515
Vvi17g0494 485 Pfam WD domain, G-beta repeat 276 297 IPR001680 GO:0005515
Vvi17g0494 485 Pfam WD domain, G-beta repeat 225 260 IPR001680 GO:0005515
Vvi17g0494 485 Gene3D - 153 483 IPR015943 GO:0005515
Vvi17g0494 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 359 IPR001680 GO:0005515
Vvi17g0494 485 ProSitePatterns Trp-Asp (WD) repeats signature. 381 395 IPR019775 -
Vvi17g0494 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 262 - -
Vvi17g0494 485 FunFam Cleavage stimulation factor subunit 50 153 485 - -
Vvi17g0494 485 SMART WD40_4 353 394 IPR001680 GO:0005515
Vvi17g0494 485 SMART WD40_4 442 482 IPR001680 GO:0005515
Vvi17g0494 485 SMART WD40_4 266 304 IPR001680 GO:0005515
Vvi17g0494 485 SMART WD40_4 397 439 IPR001680 GO:0005515
Vvi17g0494 485 SMART WD40_4 221 260 IPR001680 GO:0005515
Vvi17g0494 485 SMART WD40_4 163 202 IPR001680 GO:0005515
Vvi17g0494 485 SMART WD40_4 307 350 IPR001680 GO:0005515
Vvi17g0494 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 350 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0494 225 484 Miscellaneous Gene Families AT5G08390 23.574 5.19e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0494 K14406 - vvi:100267233 960.674