Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0487 ATGAATGAAAATGGGAATAATGCTATCTTACCAGAACATTGTACAGGTTTCTTGTTCTGCAGAAGAGTTCCCTTCGCAAAAGTGCTTTTAGGAGTGATCGAAGGAGGCACATTAAATCCTCCTTTTCAAATGTTGCGCCCAAAGCGACATCGAACGACTAAAACAGATGGGCATGCGAGATCATCTAAAAAAGGTAGTCAAGTGAGATCATCTAAAAAAGATGGTCGAGCAAGCACGACTAAAAAAGATGGTCCGGTAAATGATTTACTACCAGAACTTATCTCTGAGATCCTATCCAGACTTCCAATAGAATTAATCTTGAGATGCCGAAGCGTATGCAAGACCTGGAACTCTGTGATTCAAAGTCCTCTTTTCATCAACCTGCAAGCGAGAAAAAGCCATAATCAACCATCTCGGGTCATCCTCAAACCAATATTTGGCGGGGTTACAGCGACAACTATGCACAGCTTATTTTTACTGGATACTGAGGAACGCAAAAGTAGACGAATTCATGATAAGAGCTGGCGGTTTAGTGGTCTCCAAATCATGTCTTCTTGCAATGGTTTGCTCTGTATAACTTCAGATAGTGAGCTAGGTCCTGTTTACATATCTAATCCAATAACTAGAGAGTTTGTAATCTTGCCATCCCCAGAGACAGGTTTTAGTTTACTCAGACATCAGGTTGGTCTCGGGTTTGATTCCTCTAATGGCAAGTACATTGTCGTGCGAGCGTATACAGATAAAAGCAAAAGTCAAGTCAACAAGTTTGAGGCTATTATGTTAGGAGAAAACTCATGGAGAAGTTTAACAGTCCCTGACATTATTGCTGAATGTACCATCAATGGGTCCGTATTCTGGAATGGGGCTCTCCACTGGAAAATAAAGAAGAAACCTGGTCGTGAATGTATGCTTTCATTTGATGTGAGCTCTGGGAAGTTTGCAGTGACCCGTTTTCCAGTCAGTGCTGATGTTCCGGATGATTTTGAGATGGTGGAGTTGGATGGCCATTTGAGTTTGGTACAAGTCTATGATACTCAAATGAAAATATGGAGAGTAACAGGAGAGAAGATTGAAGGATTATCTGTCTGTTATGAAGACATGTATTGTATGAACGTGCGGTGGAACAGTTCCTTTAACTGTGAAATAATTCGTGGGTATATTGATGAAGGTTACTTGCTACAGGTGAACACTCACAGAGGCCCTGGTGGAGCTTGGAGGAGATACTTAACGCAGTATTTTCCGAAAATGGAGCAGTTCTTGTCACTGATCATCCCTAGCATTCCCATTTGCTTCAAGACCATTTCTTTCAGGCCCACTCTTATCTCTCCAATGCAGCTTCACTTTGTTCCCCATGGCTGA 1359 0.418 MNENGNNAILPEHCTGFLFCRRVPFAKVLLGVIEGGTLNPPFQMLRPKRHRTTKTDGHARSSKKGSQVRSSKKDGRASTTKKDGPVNDLLPELISEILSRLPIELILRCRSVCKTWNSVIQSPLFINLQARKSHNQPSRVILKPIFGGVTATTMHSLFLLDTEERKSRRIHDKSWRFSGLQIMSSCNGLLCITSDSELGPVYISNPITREFVILPSPETGFSLLRHQVGLGFDSSNGKYIVVRAYTDKSKSQVNKFEAIMLGENSWRSLTVPDIIAECTINGSVFWNGALHWKIKKKPGRECMLSFDVSSGKFAVTRFPVSADVPDDFEMVELDGHLSLVQVYDTQMKIWRVTGEKIEGLSVCYEDMYCMNVRWNSSFNCEIIRGYIDEGYLLQVNTHRGPGGAWRRYLTQYFPKMEQFLSLIIPSIPICFKTISFRPTLISPMQLHFVPHG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0487 452 PANTHER BNACNNG10540D PROTEIN 63 356 - -
Vvi17g0487 452 MobiDBLite consensus disorder prediction 58 81 - -
Vvi17g0487 452 SUPERFAMILY F-box domain 84 145 IPR036047 GO:0005515
Vvi17g0487 452 CDD F-box_AtFBW1-like 88 125 - -
Vvi17g0487 452 Pfam F-box domain 91 123 IPR001810 GO:0005515
Vvi17g0487 452 NCBIfam F-box protein interaction domain 183 356 IPR017451 -
Vvi17g0487 452 Pfam F-box associated 283 381 IPR006527 -
Vvi17g0487 452 Gene3D - 84 140 - -
Vvi17g0487 452 SMART fbox_2 90 128 IPR001810 GO:0005515
Vvi17g0487 452 MobiDBLite consensus disorder prediction 41 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0487 Vvi-Chr17 5482929 5489922 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0487 - - vvi:104882323 927.932