Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0482 ATGCGGAGGCGGCCGGCTGATTACCGGCGCCCGGTTCGGAGGAGGTTTTCATATTGGATCTGGGCGCTTCTTGGGTTGTTCTCTGTTGCCGGGTTGGTTCTGTTTATGGTTCAGCATAATTATCACGAGGATCGGGTCGAACAGCCGACACTGGAGAAAAATGCAAAAAGTGAACACATTTCATACAAGGGTTTAAATTTTACTGAAGAAATATTAAGTGCTACCTCATTGGCCAGGCAACTGGCTGAGCAAATATCACTTGCCAAGGCTTATGTCATTATCGCAAAAGAGCACAATAACCTTCAGCTTGCTTGGGAGTTCAGCTCAAAGATTAGAAGTTGCCAGCTTTTGCTCTCAAAAGCTGCCATGAGAGAGGAACCCATCACATTGGAGGAAGCAGAGCCCATTATTAAAAGTCTATCTGCTCTAATCTTTAAGGCGCAAGATGCCCATTATGATGTTGCTACCACAATAATGACAATGAAATCCCATATTCAAGCCCTTGAAGAGCGTGCAAAGGCAGCGACAATTCAGAGCACAGTGTTTGGGCAATTGACAGCTGAGGCACTACCTAAGAGCCTCCACTGCCTAAATGTTAAACTCACAACTGATTGGCTCAGGAAGTCATCCCTGCAAGACCTTGCAGAAGAGAAGGGAAACTCTCCCCGACTCGTAGACAACAATCTCTATCATTTCTGCATATTTTCAGATAATCTTCTGGCTGTCTCTGTAGTTATCAACTCTACTATATCCAATGCTGATCATCCAAAGCAGCTTGTCTTCCATATTGTCACAAATGGAATCAACTATGGAGCAATGCAAGCTTGGTTCCTCAGTAACGACTTCAAAGGGTCCACGATTGAAGTACAGAACATTGAGGAGTTCTCTTGGTTGAATGCTTCTTATGCTCCAGTTATGAAACAGCTTCTTGATGCAGATTCACGAGAATATTATTTTAAGGGGTCTGAAGATTTGGAGGTTGAACCAAAGTTTCGAAACCCAAAGTATATATATTTGTTGAATCACCTACGATTTTACATCCCAGAGATTTATCCACAGCTGGAGAAAGTTGTTTTCCTTGATGATGATGTTGTTGTCCAGAAGGATTTGACCTCACTTTTTTCATTGGATTTGCATGGAAATGTGAATGGAGCTGTGGAAACTTGTCTTGAAGCATTTCATCGTTATTACAAGTATCTCAATTTCTCAAACACAATCATCAGCTCAAAGTTTGACCCACAGGCTTGTGGATGGGCATTTGGTATGAATGTTTTTGATTTGATTGGATGGAGAAAAGCGAATGTGACTGCAAGGTATCATTTCTGGCAGGGTCAGAATGCTGACCAGACACTATGGAAGATGGGCATCCTTCCTGCTGGTCTTTTGACCTTTTATGGACTAACAGAACCACTTGATCGAAGATGGCATGTGCTAGGATTGGGTTATGATCTGAACATTGACAACCGTCTGATTGAGACTGCTGCAGTGATTCACTTCAATGGAAACATGAAGCCATGGCTGAAATTGGCTATTGGCAGGTACAAGCCTCTATGGGAACGGTATGTAAATCAGAGCCACCCATACCTTCAAGATTGTGTCACAAGTTGA 1608 0.4285 MRRRPADYRRPVRRRFSYWIWALLGLFSVAGLVLFMVQHNYHEDRVEQPTLEKNAKSEHISYKGLNFTEEILSATSLARQLAEQISLAKAYVIIAKEHNNLQLAWEFSSKIRSCQLLLSKAAMREEPITLEEAEPIIKSLSALIFKAQDAHYDVATTIMTMKSHIQALEERAKAATIQSTVFGQLTAEALPKSLHCLNVKLTTDWLRKSSLQDLAEEKGNSPRLVDNNLYHFCIFSDNLLAVSVVINSTISNADHPKQLVFHIVTNGINYGAMQAWFLSNDFKGSTIEVQNIEEFSWLNASYAPVMKQLLDADSREYYFKGSEDLEVEPKFRNPKYIYLLNHLRFYIPEIYPQLEKVVFLDDDVVVQKDLTSLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNTIISSKFDPQACGWAFGMNVFDLIGWRKANVTARYHFWQGQNADQTLWKMGILPAGLLTFYGLTEPLDRRWHVLGLGYDLNIDNRLIETAAVIHFNGNMKPWLKLAIGRYKPLWERYVNQSHPYLQDCVTS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0482 535 Coils Coil 158 178 - -
Vvi17g0482 535 CDD GT8_like_1 230 523 - -
Vvi17g0482 535 FunFam Hexosyltransferase 232 528 - -
Vvi17g0482 535 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 56 533 IPR029993 GO:0047262
Vvi17g0482 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 531 IPR029044 -
Vvi17g0482 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 533 IPR029044 -
Vvi17g0482 535 Pfam Glycosyl transferase family 8 234 509 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0482 Vvi-Chr17 5400026 5414396 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0482 1 532 Glycosyltransferase AT2G20810 56.611 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0482 K13648 - vvi:100262181 1080.86