Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0479 ATGAAACAGCTTCTTGATGCAGATTCACGAGAATATTATTTTAAGGGGTCTGAAGATTTGGAGAAGGATTTGACCTCACTTTTTTCATTGGATTTGCATGGAAATGTGAATGGAGCTGTGGAAACTTGTCTTGAAGCATTTCATCGTTATTACAAGTATCTCAATTTCTCAAACACAATCATCAGCTCAAAGTTTGACCCACAGGCTTGTGGATGGGCATTTGGTATGAATGTTTTTGATTTGATTGGATGGAGAAAAGCGAATGTGACTGCAAGGTATCATTTCTGGCAGGGTCAGAATGCTGACCAGACACTATGGAAGATGGGCATCCTTCCTGCTGGTCTTTTGACCTTTTGTGGACTAACAGAACCACTTGATCTAAAATGGCATGTGCTAGGATTGGGTTATGATCTGAACATTGACAACCGTCTGATTGAGACTGCTGCAGTGATTCACTTCAATGGAAACATGAAGCCATGGCTGAAATTGGCTATTGGCAGGTACAAGCCTCTATGGGAACGGCCACGAAATCCCAACATTCAAAATCCAGATGAGTTTGTATGGCCACGAAATCCCAACATTCAAAATCCAGATGAGTTCCCCAGAATGTGCTATGCACTTTTCATGAGAATAGTGACTTCCAAAAACAGGATCAAAACTGGTGACAGCTGA 672 0.4152 MKQLLDADSREYYFKGSEDLEKDLTSLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNTIISSKFDPQACGWAFGMNVFDLIGWRKANVTARYHFWQGQNADQTLWKMGILPAGLLTFCGLTEPLDLKWHVLGLGYDLNIDNRLIETAAVIHFNGNMKPWLKLAIGRYKPLWERPRNPNIQNPDEFVWPRNPNIQNPDEFPRMCYALFMRIVTSKNRIKTGDS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0479 223 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 21 174 IPR029993 GO:0047262
Vvi17g0479 223 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 175 IPR029044 -
Vvi17g0479 223 Pfam Glycosyl transferase family 8 21 163 IPR002495 GO:0016757
Vvi17g0479 223 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 20 186 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0479 Vvi-Chr17 5381828 5383506 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0479 1 174 Glycosyltransferase AT2G20810 54.167 5.30e-79 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0479 K13648 - vvi:100262181 344.354