Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0475 ATGAACCAGGTGGATATTGTGGCATCACTTCAAACCAGCTATTTCACTTCAGAAGTTGCTCCTTTTGGTGATTCTTTGGTTGTTCTAGCCTATATTCTTGGAGAAGAAGATGGAGAGAAGGAATTTAGCTGCAAGCCGCCGGCGGCGAAACGCCTCCACCATCACCACCTCACTGCCAACGCAGTCCAGCTAGGTATCAAACTCGGCTGCGGCATCCACTTCATTGCCGACTCAGTCCAGCTGGGTACCAAATTCAGCTGCAATGTCTATTCCTCAATGCCTTGCGTGGCGTCGTCGATGGGCTTCATCACATTACCTACTACATTGAGCAGAACCAAGCTCAGTTGGCAGATGGTGGATAGTTGTTTGAATGGTGCTAATGGAGTTAATCATGGGTTTCGCTTTGTTGTCGGTATGGGAGAGATGGAGTTCATTCGGTGCAATCATTCTATGTACAGTAACGCAACGACCAGTTTCAGCATACTAGAGGCTTCCAGGATCCATGAGTTTGCTTGGAAATGGTTCAGAGATCAAAACATAGAGGGTAAAGGTGGAATTGCACCCACAGTTGAAGAATTGGCTGGAGCTTTGAAAAGTCACGACCTCTTTATATATATTGGCCATGGAAGTGGGGCACAGTATATTCCCAGGCATGAGATTCAAAAACTGGAAAATCGTGCTGCTACTCTCCTAATGGGATGCAGTAGTGGATCATTGTCTCTAAATGGGCAATACACTCTGCAAGGTACTCATCTTTCCTATCTATCAGCTGGTTCCCCTGTTATAGTTGTCAATCTATGGGAAGTGACAGACAAGGATATTGACCGATTTGGTAAGGCCATGCTTGTTGCTTGGTTGAGAGAAAGATCATCTCCTTCTGTGGTTTGTGCCCAGTGCCGTTTGGTTGCTGAATTGAAGTCCATGAGCATAACTGGTGGTAAAGGAGATGCTAAGAAGAAAATTCCAATGAAGAACAAGACGGCGGGAGGAAACGATGAGCTGAGAGTGAAGGAAAACGAACTTGAGAAAGAAATAGAGCGAGCAAAGCTGTCCTCGAACGACGCCGGCGGCGAAGCGCCTCTGTCATCACCAGAACGCCAAGCAACCATTGAAGCTCTTTCACTTTCCTTCTCCTCTGATGACCTCTGCAGCATATGCCTAGATAGAGGAGAACCATGA 1179 0.4665 MNQVDIVASLQTSYFTSEVAPFGDSLVVLAYILGEEDGEKEFSCKPPAAKRLHHHHLTANAVQLGIKLGCGIHFIADSVQLGTKFSCNVYSSMPCVASSMGFITLPTTLSRTKLSWQMVDSCLNGANGVNHGFRFVVGMGEMEFIRCNHSMYSNATTSFSILEASRIHEFAWKWFRDQNIEGKGGIAPTVEELAGALKSHDLFIYIGHGSGAQYIPRHEIQKLENRAATLLMGCSSGSLSLNGQYTLQGTHLSYLSAGSPVIVVNLWEVTDKDIDRFGKAMLVAWLRERSSPSVVCAQCRLVAELKSMSITGGKGDAKKKIPMKNKTAGGNDELRVKENELEKEIERAKLSSNDAGGEAPLSSPERQATIEALSLSFSSDDLCSICLDRGEP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0475 392 MobiDBLite consensus disorder prediction 347 367 - -
Vvi17g0475 392 ProSiteProfiles SEPARIN core domain profile. 146 245 IPR030397 GO:0004197|GO:0006508
Vvi17g0475 392 PANTHER EXTRA SPINDLE POLES 1-RELATED 173 341 IPR005314 GO:0004197|GO:0005634|GO:0006508
Vvi17g0475 392 Coils Coil 331 351 - -
Vvi17g0475 392 Pfam Peptidase family C50 173 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0475 Vvi-Chr17 5334850 5341030 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0475 K02365 - vvi:100259948 288.115