Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0472 ATGGAAGAAATGGCGGAGAGGGAACGAGAAATAGAAGTCCGGAGCCTGAGCGGTGAATCAACCACCGTTTCCATATCGGAAAACAAAACCATTGAAGACCTCAAGCTCCTCCTGATTCAAACTTTCCCTCCCGCCTCCAACTCCCCCAATTTTCACCTCTTCTTCAAGGGTGCTAAATTGAGCTTACAGAGTAAGCTAAACAGTCACCCCATTGGTTCCGGAAAATTTATGGTTCTGGTCCCATTTACCAAGAAGGTTCGACAATGCAATCAATCTGCAACCACCTCGGAAGTTCCCAATCAAAGCCCAGTCTCAAACTTCGCTGATTCAGCATGGTCTGATATGATGCAAGATTTAAGGACTTTAAGCAACATGTCAAATAATGAAAATCAAACGAATTTTGACTCTGGGAGTGTAATTGAAGGAGTGAGAAATGAATTAATGGAAGAAGCCTCTGCAACATATACTTTGGAGAGGAAACGCAAAAAGTTCCATGGTGATAAACAGGAAGGATCTTCAGATGACCTTATATTAAGTTTATTGAAGTCGCCTTGTAAGATTTTCTTAGACAAACAGAATTGTGAAATACTTATTCGAGTTTTGGAGTCGGTGAATTGTTTATTGGATATGCGATCTGGCAGCTGCATGTTGTTGAGAGAAGTTGGTTTAGCCTACGGTGATGCAACGCAAAGTGGAAGCAAGACTCAAAAGCAGGTGCCTATATCAAAGATTGTCAGTGTGATGAAGAAACTGGAAAGTTGCTTCAAAACACATTTATGGAGGGCTGTTAAAGTGTTGATGCGTAAAAATGGAAATGAGATGGCCATGCTCTTTTCCTTAGAAGATCTACTGATATCTGTGAAGGAAGGTGGTGCTGGTAAGGCAAAACAAGCAAGGAGAAGCTGGTCAGCAGTTTCAAGTACTAATTCAGCTCAATCAAAATGTCATGATACAAATCCACTGCTCCCAATGGAAATGGTTGAACATCTCAGAAAGGGCATGGGATGTCAAGGACAGATGGTGCATGTTGAAGAAATTTGTGCTAGAATGGCTATTCGTGTGGAAATCCCAGATGAACTGTCAGAAAACACAAAATCTGCACTTGAACATATTGGAGTTACTAGGTTGTACAGCCACCAGGCAGAGTCGATACAAGCTTCCCTTGGAGGGAAGAATGTTGTTGTGGCAACAATGACATCCAGTGGGAAATCTCTTTGTTACAATGTTCCAGTTCTGGAAGTGTTATCCCAGAATTTGTTATCGTGTGCGCTATACTTGTTTCCAACAAAGGCATTGGCTCAAGATCAACTAAGAGCTTTGTTGGCTATGACAAAAGGGTCTGATGTTAGTTTAAAGATGGGTGTATATGATGGTGATACTTCTGAGGAGGACAGGATGTGGTTACGTGATAATGCTAGATTGTTGATCACAAATCCGGATATGTTACACATGTCAATCTTGCCTTTCCATGGACAATTTCGGCGAATTCTATCAAATCTTAGGTTTGTAATCATTGATGAAGCCCATGCTTACAAGGGAGCATTTGGATGTCACACTGCCTTTATACTGAGAAGACTTCGCCGGTTGTGTCATCATGTGTATGGCAGTGATCCATCTTTTATATTTTGTACTGCAACTTCTGCAAATCCTCGTGATCATGCTATGGAACTTGCTAATCTACCAACATTGGAGCTGATTCACAATGATGGAAGTCCTTCTGGGCCTAAGTTTTTTGCCCTCTGGAATCCTGCTTTATGCTCAAAAACTGTGTCAAAGAGATCTACAAGTAGCACGAATATTAGTAAATCTGCAGATGAAAATGTTATTGTCAAACGCTCAAGTCCAATTTGGGAAATTTCATGTCTTTTCGCAGAAATGATTCAGCATGGGCTTCGTTGCATTGCTTTTTGTAAATCGCGTAAACTTTGTGAACTTGTTTTGTCCTACACGCGTGAGATACTTCAGGAGACAGCGCCCCATCTGGTCGACTCCATATGTGCTTATCGTGCTGGTTATGTTGCTCAGGATAGGAGGAGAATAGAGAGTGATTTTTTCAGTGGGAAGCTTTGTGGTATTGCTGCTACGAATGCCCTTGAGCTGGGTATCGATGTTGGACACATTGATGTAACTCTTCATCTAGGCTTCCCTGGTAGCATTGCTAGCCTGTGGCAGCAAGCTGGGAGATCTGGGAGAAGGGAAAGACCGTCACTTGCTATATATGTTGCATTTGAAGGGCCTCTGGATCAGTACTTTATGAAATTCCCCCAGAAACTCTTCAGGAGGCCAATTGAGTGTTGTCACGTTGATGCTCAAAACCAACAGGTGCTTGAACAGCATTTGGTTTGCGCTGCTCTTGAACACCCATTGAGTTTGCTTTATGATGAGAAATATTTTGGTTCTGGTTTAAACAGTGCCATAACTTCACTTACAAATAGGGGATACCTGAGTTTTGATCCATCACGTGGTTCTTCTTCTAGAATATGGAACTACATTGGGCATGCGAAAATTCCTTCTCATGCAGTTAGTATTCGAGCGATAGAGACTGAAAAATACAAAGTCATAGACAAGGGCAGAGATGAACTACTTGAAGAGATTGAGGAAAGCAAGGCTTTCTTTCAGGTATATGATGGTGCTGTTTATATGCACCAAGGCAAGACCTATCTGGTAAAGGAGTTAGATATATCAAGAAAACTTGCTTTATGCCAACAAGCTGACTTGAAATATTACACCAAGACTCGTGATTATACTGATATTCATGTCATTGGCGGTGAGATTGCCTACCAAGCAAGGATTTCCAGGATCCAGTTTGCTAGAACAACTGCCCAAGTACATGATTGCAGAGTAACGACTACTTGGTTTGGCTTCCGTCGTATATGGAAAGGAAGCAATAAAGTCTTTGATACAGTTGAACTTTCACTACCTACATATTCATATCAGTCACAGGCAGTCTGGGTTCGAGTTCCACAATCAGTAAAAACAGCTGTGGAGATTCACAGGTTCTCATTTCGTGCAGGCTTGCATGCTGCTTCTCATGCTGTTCTAAACGTGGTCCCTCTGTAA 3060 0.4183 MEEMAEREREIEVRSLSGESTTVSISENKTIEDLKLLLIQTFPPASNSPNFHLFFKGAKLSLQSKLNSHPIGSGKFMVLVPFTKKVRQCNQSATTSEVPNQSPVSNFADSAWSDMMQDLRTLSNMSNNENQTNFDSGSVIEGVRNELMEEASATYTLERKRKKFHGDKQEGSSDDLILSLLKSPCKIFLDKQNCEILIRVLESVNCLLDMRSGSCMLLREVGLAYGDATQSGSKTQKQVPISKIVSVMKKLESCFKTHLWRAVKVLMRKNGNEMAMLFSLEDLLISVKEGGAGKAKQARRSWSAVSSTNSAQSKCHDTNPLLPMEMVEHLRKGMGCQGQMVHVEEICARMAIRVEIPDELSENTKSALEHIGVTRLYSHQAESIQASLGGKNVVVATMTSSGKSLCYNVPVLEVLSQNLLSCALYLFPTKALAQDQLRALLAMTKGSDVSLKMGVYDGDTSEEDRMWLRDNARLLITNPDMLHMSILPFHGQFRRILSNLRFVIIDEAHAYKGAFGCHTAFILRRLRRLCHHVYGSDPSFIFCTATSANPRDHAMELANLPTLELIHNDGSPSGPKFFALWNPALCSKTVSKRSTSSTNISKSADENVIVKRSSPIWEISCLFAEMIQHGLRCIAFCKSRKLCELVLSYTREILQETAPHLVDSICAYRAGYVAQDRRRIESDFFSGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAIYVAFEGPLDQYFMKFPQKLFRRPIECCHVDAQNQQVLEQHLVCAALEHPLSLLYDEKYFGSGLNSAITSLTNRGYLSFDPSRGSSSRIWNYIGHAKIPSHAVSIRAIETEKYKVIDKGRDELLEEIEESKAFFQVYDGAVYMHQGKTYLVKELDISRKLALCQQADLKYYTKTRDYTDIHVIGGEIAYQARISRIQFARTTAQVHDCRVTTTWFGFRRIWKGSNKVFDTVELSLPTYSYQSQAVWVRVPQSVKTAVEIHRFSFRAGLHAASHAVLNVVPL* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0472 1019 Gene3D - 349 562 IPR027417 -
Vvi17g0472 1019 Pfam Helicase conserved C-terminal domain 626 732 IPR001650 -
Vvi17g0472 1019 Gene3D - 610 741 IPR027417 -
Vvi17g0472 1019 PANTHER ATP-DEPENDENT HELICASE HRQ1 30 1019 - -
Vvi17g0472 1019 CDD DEXHc_Hrq1-like 376 557 - -
Vvi17g0472 1019 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 625 774 IPR001650 -
Vvi17g0472 1019 CDD SF2_C_Hrq 578 742 - -
Vvi17g0472 1019 CDD Ubl_ubiquitin_like 13 80 - -
Vvi17g0472 1019 ProSiteProfiles Ubiquitin domain profile. 9 80 IPR000626 GO:0005515
Vvi17g0472 1019 Pfam DEAD/DEAH box helicase 378 548 IPR011545 GO:0003676|GO:0005524
Vvi17g0472 1019 SMART ultradead3 372 581 IPR014001 -
Vvi17g0472 1019 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 565 IPR014001 -
Vvi17g0472 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 751 IPR027417 -
Vvi17g0472 1019 SUPERFAMILY Ubiquitin-like 6 81 IPR029071 -
Vvi17g0472 1019 SMART helicmild6 652 733 IPR001650 -
Vvi17g0472 1019 FunFam DEAD/DEAH box helicase 611 760 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0472 - - vvi:100257644 1562.74