Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0470 ATGGCGATGACAAGCAGGCTTGTGTTTCTCATTGCATTTCTTGTGGCCTCCTCCTGCACCACAGAGGCCATGAAGAAGAAGAAGGTCACCAACATCCAATTCTACATGCATGATATTGTCAGTGGCCCGAACCCGACTGCTGTCAAGGTTGCTGGCCAGTTGACCAATTCCACGAGCTCAAATTGGATTGCATCCACGTTTGGATCCATTTATGTGATAGACGACCCGCTCACAGCCACACCCCAGATGAATTCCACGCTGATGGGGCGCGCTCAAGGCATCTACGCCATGGCATCACAGCAGGATGAGTTTAGCCTCCTCATGACGATTACATATGGATTTGTCAGTGGACGCTATAATGGGAGCTCATTTAGCGTGGTGGGCCGGAATCCGGTGATGAATGAAGTGAGGGAGATGCCGATTGTTGGAGGAACCGGGATTTTCCGGCTAGCTAGCGGATACTGCTTGGCACATACCTACTCCATGAATGAAATGGATGCAGTGATAGGATACAATGCGACCTTGATTCACTATTAA 537 0.4972 MAMTSRLVFLIAFLVASSCTTEAMKKKKVTNIQFYMHDIVSGPNPTAVKVAGQLTNSTSSNWIASTFGSIYVIDDPLTATPQMNSTLMGRAQGIYAMASQQDEFSLLMTITYGFVSGRYNGSSFSVVGRNPVMNEVREMPIVGGTGIFRLASGYCLAHTYSMNEMDAVIGYNATLIHY* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0470 178 Gene3D - 15 174 IPR044859 -
Vvi17g0470 178 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vvi17g0470 178 Pfam Dirigent-like protein 30 175 IPR004265 -
Vvi17g0470 178 PANTHER NUCLEOPORIN-RELATED 16 173 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0470 Vvi-Chr17 5277217 5277753 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0470 - - vvi:100268098 355.14