Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0466 ATGTTGGTTCTTGGTATGAATTCAAAAAGACAGAGGCGGCCAAATGTTAGGTTGGGGGAGATTGGAGATGTTTCTGCAGCTTTTGCATCTGTCTCTTCCCAGAAAACTCACAAGAGATGGAAACATGACCTTGTGAACCCTATGGAAACTGAGTGTAACTCTGGTTATGGGTTTTCAGATCCTGGAGTCTCTCCTAGGGTTACAGCTGATTTACAGCAGAACAGAGAGAATAAGAACCCTAACTCTTCCAAATCAGGTTTTGAGTTAGTCAGCTCAGAGGAAATTGATATGACTAAGTCTGAACTGAATTTTGGGAAGATAACCCGGAAATGTCGGCTGATGAAGCGACGGGTAAGGAGCACTGGAGGTAACAATAGTGTTTTTGGTAGTGTTTGGGGTTCTAAACTTAGTCCTGAATTCAGTAGTGAAGATGGGAAGGAATATGGAGGGAAGGAGTTTGCTGGATTCACATTGAATGAGTTCTCTGATCTTGACCCCATTGATGGTTTTAAGAGCTATTCAGATCATGAAACTTCAGGTATGAGCAAAGAAGCTTGCGAGAATGATATGGATGAACCCAATTTGCCCCAACACAATCCTAGTGAGTCTTGGAAGGAAGATGCTTGGTATGAAGTGAATAACGGCTTTCCTAAATCTAGTGGTGAATGTGATAAGATGACAATTGGAGGCAGTAATGTAAATAGTGTTAGGGGATGGTTGGAAGATATAGGGTTTGGTAAGTATGCCGGTGTTTTTGAAATGCACGAGGTGGATGAGGAAGCTTTGCCATTACTTACTTTTGAAGACCTCAAAGAGATGGGTGTTCTTTCTATTGGGCCTCGTCGGAGGTTGTACACTGCAATTCAGCAATTAAAGGAAGGAGGAGGGGGAATTTCTGCTTGA 903 0.4252 MLVLGMNSKRQRRPNVRLGEIGDVSAAFASVSSQKTHKRWKHDLVNPMETECNSGYGFSDPGVSPRVTADLQQNRENKNPNSSKSGFELVSSEEIDMTKSELNFGKITRKCRLMKRRVRSTGGNNSVFGSVWGSKLSPEFSSEDGKEYGGKEFAGFTLNEFSDLDPIDGFKSYSDHETSGMSKEACENDMDEPNLPQHNPSESWKEDAWYEVNNGFPKSSGECDKMTIGGSNVNSVRGWLEDIGFGKYAGVFEMHEVDEEALPLLTFEDLKEMGVLSIGPRRRLYTAIQQLKEGGGGISA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0466 300 SUPERFAMILY SAM/Pointed domain 230 293 IPR013761 -
Vvi17g0466 300 PANTHER SCP160 214 296 - -
Vvi17g0466 300 Gene3D - 230 296 IPR013761 -
Vvi17g0466 300 Pfam SAM domain (Sterile alpha motif) 231 292 IPR001660 GO:0005515
Vvi17g0466 300 CDD SAM_superfamily 235 289 - -
Vvi17g0466 300 SMART SAM_4 228 294 IPR001660 GO:0005515
Vvi17g0466 300 ProSiteProfiles SAM domain profile. 231 294 IPR001660 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0466 Vvi-Chr17 5226885 5227787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0466 234 288 Glycosyltransferase AT3G07170 40.000 2.99e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0466 - - vvi:100259380 617.076