Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0463 ATGTGTAGGTTAGAAAGGAGTGAGAAAAAGGGGGTTGTGATTGGGATGGGGTTGAAGGCATTGAGTGCGAGTAGGGTGGAGAAGCTAAAGAGTTCGATGGTGACATCAAGGTCCCGAATGAAGCTATGGATGATCAGGGCTACGACCTCGGTTTTGCTATGGACATGTATTGTTCAGTTAACGGCGTTGGGAGATATGTGGGGCCCTAGGGTTTTGAAGGGTTGGCCTTCTTGTTTTACACAAGATTCTTCCGCCGCGGCGTCGGCGTTGGACGACAAATTGGGGTGGTCCGCTCCGCCGCGAGTCCTTCCGCCCAAGAGGGTTTATAAGAACAATGGTTACTTGATGGTCTCATGCAATGGAGGACTTAATCAAATGCGAGCGGCGATATGTGACATGGTTGCAATTGCTAGATACTTAAATGTCACTCTTATTGTCCCTGAGCTGGATAAAACCTCCTTTTGGGCTGACCCAAGTGAGTTTGAAGATATATTTGATGTTGATCATTTCATTACATCATTGAGAGATGAGGTTCGTGTATTAAAAGAGCTACCACCGAGGCTAAAGAAGAGGGTGGAGCAAGGAGTGTTCTATTCCATGCCTCCCATTAGTTGGTCAGATATTTCTTACTATCGTAATCAGATTCTTCCACTAATACAGAAGTACAAAGTTGTGCACTTAAATAGAACCGATGCCCGGCTTGCCAATAATGGGCAACCTTTAGAGATTCAGAAGTTGCGTTGCCGAGTAAATTTCAGTGCTTTGAGATTTACTTCTCAGATAGAGGAGTTGGGTAGGAGAGTTATCAGGCTTCTGAGGCAAAATGGTCCATTCCTAGTGCTTCATCTGAGATATGAAATGGACATGTTAGCATTTTCGGGATGTACACAAGGCTGCAATGAAGATGAGGTGGAAGAGTTGACAAGAATGAGATATGCTTATCCCTGGTGGAAAGAAAAAATTATAAATTCTGACTTGAAAAGGAAAGATGGTTTATGCCCCTTGACTCCTGAGGAAACTGCTCTGACACTGAGGGCACTGGACATTGATCGAAATATCCAGATCTATATTGCTGCTGGAGAAATATATGGTGGAGAAAGGAGAATGGCAACTCTTGCAGCAGCCTATCCAAAATTGGTCAGAAAGGAGACACTATTGGAATCCTCGGACCTTAGATTTTTCCAGAATCATTCGTCTCAGATGGCAGCATTGGATTATCTCGTCTCATTGGAGAGTGATATTTTTGTTCCTACATATGACGGAAACATGGCCAAGGTTGTTGAAGGTCATCGCAGATTTCTTGGGTTCAAGAAGACCATTCTTTTGGACAGAAGGCTTCTAGTTGATTTGATAGACCAGTACACCAAAGGATCTCTGAGTTGGGATGAATTCTCCTCTGCTGTAAAGGAGTCTCATGGAGATCGCATGGGGAACCCGATCAAAAGGCTAGTGATTCCAGACAGACCTAAAGAAGAAGATTATTTCTATGCCAATCCGCAGGAGTGTTTGCAACCATTAAATGAGCCGTTGAGTAGTAGTTCATGA 1545 0.4395 MCRLERSEKKGVVIGMGLKALSASRVEKLKSSMVTSRSRMKLWMIRATTSVLLWTCIVQLTALGDMWGPRVLKGWPSCFTQDSSAAASALDDKLGWSAPPRVLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSEFEDIFDVDHFITSLRDEVRVLKELPPRLKKRVEQGVFYSMPPISWSDISYYRNQILPLIQKYKVVHLNRTDARLANNGQPLEIQKLRCRVNFSALRFTSQIEELGRRVIRLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNEDEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLRALDIDRNIQIYIAAGEIYGGERRMATLAAAYPKLVRKETLLESSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGFKKTILLDRRLLVDLIDQYTKGSLSWDEFSSAVKESHGDRMGNPIKRLVIPDRPKEEDYFYANPQECLQPLNEPLSSSS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0463 514 CDD O-FucT_plant 114 439 IPR024709 -
Vvi17g0463 514 PIRSF UCP009360 5 500 IPR024709 -
Vvi17g0463 514 Pfam GDP-fucose protein O-fucosyltransferase 114 433 IPR019378 -
Vvi17g0463 514 PANTHER OS02G0726500 PROTEIN-RELATED 37 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0463 Vvi-Chr17 5190726 5194134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0463 110 509 Miscellaneous Gene Families AT2G37980 49.631 4.09e-134 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0463 K23280 - vvi:100247578 1028.08