Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0452 ATGGCTGCGGTGGTGCCAGCACCGCCACTCTCATGGCGCAGTCACCACAGCCGCACTACCGTCTTCTACAGAATCACCCGCAAATCAAAGAACAAGTATTCTCTCCATTCAATCTTCACCCCAATAGCATCTCTTTCTCTCTCTGCTCAAACCCGCCAAACGAAGTCTCTCTCTTTCGCCAACTCTTCAACAAACCGTCAATTCTCTTCATTACATGAGATTAAGAAGCTCTGCGAATCTGGAAACCTCAAGGAAGCTTTGGATTTTCTTCAAAGAGAGTCAGACGATGTCGTTTTGGATTCCGCCCAGAGATCAGAGGCTATGGGTGTTCTTTTACAGGCCTGTGGACAACGGAAAGACATTGAGGTTGGCCGGAGACTCCATGAGATGGTTTCTGCGTCGACCCAGTTCTGTAATGATTTTGTTCTCAACACCCGAATCATTACAATGTACTCAATGTGTGGGTCTCCTTCGGATTCTCGTATGGTTTTTGATAAATTGCGGAGGAAGAACTTGTTTCAGTGGAATGCAATTGTTAGTGCGTACACCAGAAATGAACTTTTTGAAGATGCAATGTCTATCTTCTCTGAGTTGATTTCGGTGACTGAGCATAAACCCGATAATTTTACATTGCCATGCGTGATTAAGGCTTGTGCTGGGCTTTTGGATTTGGGATTGGGACAAATAATTCATGGAATGGCAACGAAGATGGATTTGGTTTCTGATGTGTTTGTGGGCAATGCTTTGATTGCAATGTATGGGAAATGTGGACTTGTCGAAGAAGCAGTTAAAGTGTTTGAACATATGCCTGAAAGAAACTTAGTTTCTTGGAATTCGATTATTTGTGGATTTTCAGAGAATGGATTTTTGCAAGAAAGTTTTAATGCGTTTAGAGAAATGTTGGTGGGTGAGGAAAGTTTTGTACCGGATGTTGCTACTCTTGTGACTGTACTACCAGTGTGTGCAGGGGAAGAGGATATTGAAAAGGGGATGGCAGTTCATGGTTTGGCTGTGAAATTGGGGTTGAATGAGGAACTAATGGTGAATAATTCATTGATTGACATGTATTCAAAATGTAGGTTCTTGTCTGAAGCTCAACTCTTATTTGACAAGAATGATAAGAAAAATATTGTTTCCTGGAATTCCATGATTGGTGGTTATGCTAGAGAAGAGGATGTGTGTCGAACCTTTTATCTTTTGCAGAAAATGCAAACTGAAGATGCCAAAATGAAAGCAGATGAGTTTACCATTTTGAATGTATTGCCAGTTTGTTTAGAGAGGTCAGAATTACAGAGCTTGAAGGAACTTCATGGTTATTCATGGAGACATGGGTTACAAAGCAATGAACTGGTGGCAAATGCTTTTATTGCAGCCTACACGAGGTGTGGGGCGTTATGTTCTTCTGAGCGTGTCTTTGATCTTATGGATACCAAGACAGTGAGTTCTTGGAATGCTCTACTTTGTGGCTATGCACAAAATTCAGATCCTAGAAAGGCTTTAGATTTGTACCTTCAAATGACAGACTCAGGGCTGGATCCTGACTGGTTTACCATTGGTAGCTTACTTTTAGCATGTTCCCGCATGAAATCCCTACACTATGGTGAAGAAATTCATGGATTTGCCCTAAGAAATGGGTTAGCAGTGGATCCATTTATTGGTATCTCACTACTATCACTTTATATTTGTTGTGGGAAACCCTTTGCTGCCCAAGTATTATTTGATGGGATGGAGCATAGAAGTCTAGTATCTTGGAATGTGATGATTGCAGGCTACTCACAGAATGGACTCCCTGATGAAGCCATAAATCTCTTCCGTCAAATGCTTTCTGATGGAATCCAACCTTATGAGATTGCAATAATGTGTGTGTGTGGCGCTTGTTCGCAGCTGTCAGCTTTGCGACTGGGGAAAGAACTCCATTGCTTTGCTTTAAAAGCCCACTTGACTGAAGACATATTTGTCAGTTCTTCAATCATAGATATGTATGCAAAAGGTGGATGCATAGGGCTTTCTCAAAGGATTTTTGACAGACTGAGGGAGAAAGATGTGGCATCATGGAATGTTATAATTGCAGGATATGGAATTCATGGTCGCGGAAAAGAGGCCTTAGAGCTATTTGAAAAAATGCTAAGATTGGGCCTCAAGCCTGATGATTTCACATTCACTGGTATCCTTATGGCATGTAGCCATGCTGGGCTGGTTGAAGATGGTCTAGAATATTTCAATCAGATGCTGAATTTGCATAACATAGAGCCAAAGTTAGAGCATTATACTTGTGTGGTGGATATGCTAGGTCGTGCTGGACGCATAGATGATGCTTTGAGGCTTATAGAAGAGATGCCTGGGGATCCTGATTCTAGAATTTGGAGTTCATTGCTCAGTTCCTGTAGAATTCATGGTAACTTGGGTTTGGGGGAGAAAGTCGCCAACAAGTTACTAGAACTGGAGCCAGAAAAACCTGAGAATTATGTGTTAATCTCAAATTTATTTGCTGGATCAGGCAAATGGGATGATGTGAGAAGAGTGAGGGGAAGGATGAAGGACATTGGCCTTCAAAAGGATGCTGGCTGTAGTTGGATTGAAGTTGGAGGGAAAGTTCATAACTTCCTCATTGGTGACGAAATGCTCCCAGAGTTGGAAGAGGTCCGAGAGACATGGAGAAGACTAGAGGTGAAGATAAGTAGCATTGGATATACACCAGATACAGGTTCAGTGCTGCATGACTTGGAAGAAGAGGATAAAATAGGGATACTACGGGGGCATAGTGAGAAGCTTGCAATTTCTTTTGGGCTGCTGAATACAGCTAAAGGTTTACCTGTTAGGGTGTACAAGAATCTTCGCATTTGTGGGGATTGTCACAATGCGGCCAAATTCATATCAAAGGTAGTCAACAGGGATATAGTTGTGAGAGATAACAAGCGCTTCCACCATTTCAGAGATGGGATTTGTTCCTGTGGAGACTATTGGTAG 2967 0.421 MAAVVPAPPLSWRSHHSRTTVFYRITRKSKNKYSLHSIFTPIASLSLSAQTRQTKSLSFANSSTNRQFSSLHEIKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0452 988 Gene3D Tetratricopeptide repeat domain 436 541 IPR011990 GO:0005515
Vvi17g0452 988 Gene3D Tetratricopeptide repeat domain 46 223 IPR011990 GO:0005515
Vvi17g0452 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Vvi17g0452 988 FunFam Pentatricopeptide repeat-containing protein At3g14330 46 225 - -
Vvi17g0452 988 Pfam PPR repeat 275 301 IPR002885 -
Vvi17g0452 988 Pfam PPR repeat 755 780 IPR002885 -
Vvi17g0452 988 Pfam PPR repeat 378 403 IPR002885 -
Vvi17g0452 988 Pfam PPR repeat 247 273 IPR002885 -
Vvi17g0452 988 Pfam PPR repeat 582 612 IPR002885 -
Vvi17g0452 988 Pfam PPR repeat 175 199 IPR002885 -
Vvi17g0452 988 Pfam PPR repeat 350 371 IPR002885 -
Vvi17g0452 988 FunFam Pentatricopeptide repeat-containing protein chloroplastic 536 636 - -
Vvi17g0452 988 Pfam E motif 798 860 IPR046848 -
Vvi17g0452 988 NCBIfam pentatricopeptide repeat 275 301 IPR002885 -
Vvi17g0452 988 NCBIfam pentatricopeptide repeat 582 614 IPR002885 -
Vvi17g0452 988 NCBIfam pentatricopeptide repeat 247 275 IPR002885 -
Vvi17g0452 988 NCBIfam pentatricopeptide repeat 482 515 IPR002885 -
Vvi17g0452 988 NCBIfam pentatricopeptide repeat 756 779 IPR002885 -
Vvi17g0452 988 NCBIfam pentatricopeptide repeat 684 716 IPR002885 -
Vvi17g0452 988 Gene3D Tetratricopeptide repeat domain 224 302 IPR011990 GO:0005515
Vvi17g0452 988 Gene3D Tetratricopeptide repeat domain 543 640 IPR011990 GO:0005515
Vvi17g0452 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Vvi17g0452 988 FunFam Pentatricopeptide (PPR) repeat-containing protein 744 907 - -
Vvi17g0452 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Vvi17g0452 988 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 528 925 IPR046960 GO:0003723|GO:0009451
Vvi17g0452 988 FunFam Pentatricopeptide repeat-containing protein chloroplastic 434 535 - -
Vvi17g0452 988 FunFam Pentatricopeptide repeat-containing protein At3g63370, chloroplastic 226 326 - -
Vvi17g0452 988 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 637 743 - -
Vvi17g0452 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Vvi17g0452 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Vvi17g0452 988 FunFam Pentatricopeptide repeat-containing protein At3g14330 328 433 - -
Vvi17g0452 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 206 IPR002885 -
Vvi17g0452 988 Gene3D Tetratricopeptide repeat domain 303 435 IPR011990 GO:0005515
Vvi17g0452 988 Gene3D Tetratricopeptide repeat domain 655 872 IPR011990 GO:0005515
Vvi17g0452 988 Pfam PPR repeat family 680 727 IPR002885 -
Vvi17g0452 988 Pfam PPR repeat family 479 525 IPR002885 -
Vvi17g0452 988 Pfam DYW family of nucleic acid deaminases 896 988 IPR032867 GO:0008270
Vvi17g0452 988 SUPERFAMILY TPR-like 150 842 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0452 Vvi-Chr17 5104509 5107475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0452 207 988 Glycoside Hydrolase AT3G49170 35.456 3.19e-171 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0452 - - vvi:100259264 1984.92