Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0449 ATGTCGAAGCTTCTTCACGGTTGTCACCTCACTTCTATCCACCGCCGGAGTTGCGCCGCAATTCTATCCAAGCCTCTGCGTTCAATTCGCGTGGTTTCCTCTCTCCAGCCCCAATTCTCTCCCTCCAAACCCCAAAATGCCCTCTCATATTTCTCCCCATCTCTTCACCGCCGAAACCTCTCCCTCCGGGCATTCGACTCCTCTTCCGAAACCAAAAGCGACGTCGTATCCGAGGAGGCAGGTGAGAAAGACTACAAAGACGACGATGGTGCTCTCTCTTCTACCTCTTTGGCGGAGGAGTACCCGACCGGTGACTTCGAGTTCAAGGAAATGAGTGGGTGGATGAGCTTCGTCGTGAAGCTTCGAATGCTCATTGCGTTCCCCTGGGAACGCGTTCGCAAGGGCAGTGTTTTTACTATGAAATTGCGCGGCCAGATATCTGATCAGCTGAAGAGCCGTTTCTCTTCAGGATTATCTTTACCTCAAATTTGTGAAAACTTTATAAAAGCAGCATATGATCCTCGCATCTCTGGTATCTATCTCCATATAGAACCTCTAAGTTGCGGGTGGGGTAAAGTTGAAGAAATTCGGCGGCACATATTAGATTTTAAGAAATCAGGTAAATTCATCGTGGCTTATGCCCCTGCATGCGGAGAGAAAGAATATTACCTTGGTTCTGCTTGTGATGAGCTATATGCACCCCCAAGTGCATATTTTTCTTTATATGGTCTGACTGTTCAAGCATCCTTTCTTGGAGGTGTTTTTGAGAAAGTAGGAATTGAACCACAAGTGCAAAGGATTGGTAAATACAAAAGTGCAGGGGATCAACTTACACGCAAAACGATGTCTGAAGAAAACTGTGAGATGTTGACTGCATTACTTGATAATATCTATGGAAATTGGCTGGATAAAATTTCTTCAGCAAAAGGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGATGAGGTTATTTCTATATTGAAAGAGAGACTGGGACAGCCAAAGGATAAAAATCTTCCAATGGTTGATTACAGGAAATACTCTAAAGTTAGGAAATGGACCCTTGGTTTATCTGGTGGTAAAGACCAAATAGCTGTAATCAGAGCATCTGGAAGTATCAGTCGTGTGCGCAGTCCATTCAGCATACCTGGTTCGGGTATAACTAGTGAGCAATTCATTGAGAAGATTCGTAGTGTGAGAGATTCAAAAAGATATAAGGCTGTTATCATTCGCATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGGGAAATCAGACTTCTGGCTGCCTCAAAACCTGTCATTGCATCAATGTCTGATGTGGCTGCTAGCGGAGGGTACTACATGGCAATGGGAGCAGGGACTATAGTTGCAGAAAATCTTACTTTAACAGGTTCCATTGGAGTTGTTACAGGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCCTTTCAGACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCTGTAGATAAGATGGAGGAGAATGCTCAAGGGAGAGTTTGGACTGGTAAAGATGCAGCTTCACGAGGTTTGGTCGATGCTATTGGTGGGCTCTCTCGTGCTGTTGCTATAGCAAAACAGAAGGCAGATATACCTCAAGACAGACCGGTTACTCTTGTTGAGTTGTCAAGACCGTCGCCTACTGTATCAGAAATCTTGACTGGCATAGGAAGCTCTATAGTGGGTGTGGAGAGAACATTGAAAGAACTACTGCAAGATTTGACATTTTCGAATGGAGTTCAAGCCCGGATGGACGGTATACTGTTTCAGAAACTGGAGGAGGCTTCGGATTCCAACCCCATATTCACTCTGGTAAAGGACTACCTAAGTTCTCTCTGA 2061 0.4401 MSKLLHGCHLTSIHRRSCAAILSKPLRSIRVVSSLQPQFSPSKPQNALSYFSPSLHRRNLSLRAFDSSSETKSDVVSEEAGEKDYKDDDGALSSTSLAEEYPTGDFEFKEMSGWMSFVVKLRMLIAFPWERVRKGSVFTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDPRISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEKEYYLGSACDELYAPPSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNINYDDEVISILKERLGQPKDKNLPMVDYRKYSKVRKWTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQFIEKIRSVRDSKRYKAVIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIGVVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKADIPQDRPVTLVELSRPSPTVSEILTGIGSSIVGVERTLKELLQDLTFSNGVQARMDGILFQKLEEASDSNPIFTLVKDYLSSL* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0449 686 CDD S49_Sppa_N_C 385 600 IPR047272 -
Vvi17g0449 686 Gene3D - 130 381 - -
Vvi17g0449 686 PANTHER PROTEASE 4 90 685 - -
Vvi17g0449 686 SUPERFAMILY ClpP/crotonase 379 591 IPR029045 -
Vvi17g0449 686 SUPERFAMILY ClpP/crotonase 121 339 IPR029045 -
Vvi17g0449 686 Gene3D - 244 310 - -
Vvi17g0449 686 Pfam Peptidase family S49 454 605 IPR002142 GO:0006508|GO:0008233
Vvi17g0449 686 Pfam Peptidase family S49 203 352 IPR002142 GO:0006508|GO:0008233
Vvi17g0449 686 Gene3D - 531 658 - -
Vvi17g0449 686 Gene3D - 382 530 - -
Vvi17g0449 686 NCBIfam signal peptide peptidase SppA 386 601 IPR004635 GO:0006508|GO:0008233
Vvi17g0449 686 CDD S49_SppA_67K_type 139 351 IPR047217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0449 Vvi-Chr17 4959344 4975354 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0449 K04773 - vvi:100262763 1343.56