Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0444 | ATGCCTACTGTTAGCGTTGGGAGGGATCATCTGTTCGAAGCCCTGGGACGAACCTACGAACAAGAGGAATTTGAGGAGCTATGCTTCGAATTTGGAATTGAGCTGGACGATGTTACTACTGAAAAGGAAATTATGAGGAAAGAAAAGCATTTGGAAGAAGAAGCATCTGCCAACGAAGAAGTTATCTATAAAATCGAAGTGCCAGCAAATAGATATGACTTGCTGTGCCTTGAAGGGCTTGTTCAAGCTCTGCGGATTTTTAAAAAGGCTGATCAGATACCTACTTATACATTGGCTGATGTTAGTAAGGAATCAATGCTTAAAATGCATGTAAAACCAGAGACCTCTTTAATTCGGCCATTTGTTGTATGTGCTGTTTTACGAGGTATAACTTTTGATGAATCAAGATACAACAGCTTTATTGATCTTCAAGATAGGCTTCATCAGAACATCTGCCGGCGAAGAACCTTGGTTGCAATTGGAACTCATGACTTGGATACAATTCAAGGTCCTTTTACATATGAGGCTTTGCCCCCCTCAGATATCAATTTTGTGCCATTGAAACAGGTTAAAAAGTTCAGAGCTGATGAGCTGATGGAGTTTTACAAATCAGATTTAAAGCTGAAGAAATTCTTGCACATAATTGAGAATTCACCTGTGTTCCCCGTTATATATGATCATAACAGGACCGTTCTGTCTTTACCCCCAATTATAAATGGTGCCCATTCTGCAATCAATCTAAAGACAAAAAATGTGTTCATTGAATGTACAGCCACTGATTTGACAAAGGCCAAGATTGTTTTAAACACAATGGTGACAATGTTTTCAATGTACTGTGAAAGAAAGTTTGAGGTCGAACCAGTTGAAGTGATATATCCTGATGGAAAGTCATGTCTTTATCCTGATCTGTCAGTCTACAGTATGGAAGTTCCTCTATCTTATATCATAGATACAGTTGGGGTTTCTTTGGAGGCGGACGAGGTTACTAGTTTGTTAAATCGAATGCAATTGCATGCCAAGCAGTCCTTATCAGAAGATAAAGAGTGCAAAATCATTGTCTCTGTTCCCCCAACAAGAAGTGATGTTCTTCATCCATGCGATGTGGTTGAGGACGTTGGTATAGCATATGGGTATAATAATGTTCCAAGGAGGAAACTTGCATCGTTGAAGCCACTGCCATTGAACCAACTGAGTGATCTCATCAGATTGGAGATTGCAATGAATGGTTTTACAGAGATATTGACATGGATATTATGCTCTTACAAAGAAAATTTCTCCATGTTGAACCGTAAAGATGACAAATCAACAGCAGTGATAATTGGAAATCCTCGTTCTGCTGATTTTGAGGTTGTCCGGACAAGTCTTATGCCAGGTGCATTAAAAACAGTTGCGCATAACAAAGACCACCCCAAGCCCATAAAGATATTTGAGGTTGGTGATATAGCGGTATTGGATGAGGCAAAAGATGTTGGTGCAACAAATCGTCGTCAACTTGCAGCTCTATATTGTGGTGCTAATTCTGGATTTGAGCTAATTCACTGCCTTGTCGACAGAATTATGGAAATTATTGGATGTCCTTTTGTTGCAGTTGGAGACGATACTGGGTACTACATAAAGCTTTCAAATGAACCCGAGTTTCTTCCAGGTCGACAAGCTAGCATCATTTACAGAGGGAAGCACATAGGCACCTTTGGCATTGTGCACCCAGAGATCCTGAACAACTTCGACATTTCAGATCCATGCTCCTTTCTGGAACTCAACATGGAGAGCTTTTTGTAG | 1779 | 0.4008 | MPTVSVGRDHLFEALGRTYEQEEFEELCFEFGIELDDVTTEKEIMRKEKHLEEEASANEEVIYKIEVPANRYDLLCLEGLVQALRIFKKADQIPTYTLADVSKESMLKMHVKPETSLIRPFVVCAVLRGITFDESRYNSFIDLQDRLHQNICRRRTLVAIGTHDLDTIQGPFTYEALPPSDINFVPLKQVKKFRADELMEFYKSDLKLKKFLHIIENSPVFPVIYDHNRTVLSLPPIINGAHSAINLKTKNVFIECTATDLTKAKIVLNTMVTMFSMYCERKFEVEPVEVIYPDGKSCLYPDLSVYSMEVPLSYIIDTVGVSLEADEVTSLLNRMQLHAKQSLSEDKECKIIVSVPPTRSDVLHPCDVVEDVGIAYGYNNVPRRKLASLKPLPLNQLSDLIRLEIAMNGFTEILTWILCSYKENFSMLNRKDDKSTAVIIGNPRSADFEVVRTSLMPGALKTVAHNKDHPKPIKIFEVGDIAVLDEAKDVGATNRRQLAALYCGANSGFELIHCLVDRIMEIIGCPFVAVGDDTGYYIKLSNEPEFLPGRQASIIYRGKHIGTFGIVHPEILNNFDISDPCSFLELNMESFL* | 593 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0444 | 592 | ProSiteProfiles | B5 domain profile. | 303 | 383 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Vvi17g0444 | 592 | FunFam | phenylalanine--tRNA ligase beta subunit | 392 | 592 | - | - | |
| Vvi17g0444 | 592 | Gene3D | - | 1 | 89 | - | - | |
| Vvi17g0444 | 592 | NCBIfam | phenylalanine--tRNA ligase subunit beta | 1 | 592 | IPR004531 | GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 | |
| Vvi17g0444 | 592 | SMART | B5_2 | 305 | 378 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Vvi17g0444 | 592 | FunFam | Phenylalanine--tRNA ligase beta subunit | 1 | 89 | - | - | |
| Vvi17g0444 | 592 | Pfam | tRNA synthetase B5 domain | 308 | 378 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Vvi17g0444 | 592 | Gene3D | Bira Bifunctional Protein; Domain 2 | 392 | 592 | IPR045864 | - | |
| Vvi17g0444 | 592 | FunFam | Phenylalanyl-tRNA synthetase, beta subunit | 306 | 381 | - | - | |
| Vvi17g0444 | 592 | SUPERFAMILY | PheT/TilS domain | 221 | 261 | - | - | |
| Vvi17g0444 | 592 | Pfam | Phenylalanyl tRNA synthetase beta chain CLM domain | 382 | 588 | IPR041616 | - | |
| Vvi17g0444 | 592 | SMART | B3_4_2 | 118 | 280 | IPR005146 | GO:0003723|GO:0004826 | |
| Vvi17g0444 | 592 | Pfam | B3/4 domain | 119 | 280 | IPR005146 | GO:0003723|GO:0004826 | |
| Vvi17g0444 | 592 | CDD | PheRS_beta_core | 393 | 591 | IPR041616 | - | |
| Vvi17g0444 | 592 | Gene3D | - | 306 | 381 | - | - | |
| Vvi17g0444 | 592 | Gene3D | - | 100 | 304 | IPR020825 | - | |
| Vvi17g0444 | 592 | SUPERFAMILY | Class II aaRS and biotin synthetases | 375 | 591 | IPR045864 | - | |
| Vvi17g0444 | 592 | Pfam | Phe-tRNA synthetase beta subunit B1 domain | 1 | 89 | IPR040659 | - | |
| Vvi17g0444 | 592 | SUPERFAMILY | Putative DNA-binding domain | 306 | 382 | IPR009061 | - | |
| Vvi17g0444 | 592 | FunFam | phenylalanine--tRNA ligase beta subunit | 100 | 304 | - | - | |
| Vvi17g0444 | 592 | SUPERFAMILY | Putative DNA-binding domain | 5 | 94 | IPR009061 | - | |
| Vvi17g0444 | 592 | PANTHER | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 | 1 | 592 | IPR045060 | GO:0004826|GO:0006432 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0444 | K01890 | - | vvi:100261003 | 1176.39 |