Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0426 ATGGCGGAGCTTGAAGTTAATCAAATCAAGCAGCTAAGATCCATATTTTCTCGCTTTGACATGGACTCTGATGGCAGCCTGACCCTTCTGGAGCTTGCGGCGCTGTTAAGATCATTGGGACTCAAGCCCTCAGGCGATCAAATTCATTCCCTGTTAGCTAACATAGACTCAAACGGTAATGGGTCGGTGGAATTTGATGAGCTGGTGAGTGCCATAATGCCTGACATGAACGAGGAGATACTGATAAACCAACAACAGCTACTCGAGGTTTTTCGGTCCTTTGATCGCGACAGAAATGGCTACATTACTGCAGTTGAGCTTGCAGGCGCCATGGCTAAAATGGGACAACCTTTGACGTATCGAGAGCTCACTGATATGATCCGGGAGGCTGATACAAACGGAGATGGCGTCATTAGTTTTAATGAGTTTTCATCTATAATGGCCAAGTCTGCTGGGGACTTCTTAGGCCTTACTTTGTTATAA 483 0.4596 MAELEVNQIKQLRSIFSRFDMDSDGSLTLLELAALLRSLGLKPSGDQIHSLLANIDSNGNGSVEFDELVSAIMPDMNEEILINQQQLLEVFRSFDRDRNGYITAVELAGAMAKMGQPLTYRELTDMIREADTNGDGVISFNEFSSIMAKSAGDFLGLTLL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0426 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Vvi17g0426 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Vvi17g0426 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Vvi17g0426 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Vvi17g0426 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Vvi17g0426 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Vvi17g0426 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Vvi17g0426 160 Gene3D - 80 153 - -
Vvi17g0426 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Vvi17g0426 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Vvi17g0426 160 SUPERFAMILY EF-hand 3 148 IPR011992 -
Vvi17g0426 160 Gene3D - 1 79 - -
Vvi17g0426 160 CDD EFh 86 148 IPR002048 GO:0005509
Vvi17g0426 160 SMART efh_1 122 150 IPR002048 GO:0005509
Vvi17g0426 160 SMART efh_1 86 114 IPR002048 GO:0005509
Vvi17g0426 160 SMART efh_1 47 75 IPR002048 GO:0005509
Vvi17g0426 160 SMART efh_1 11 39 IPR002048 GO:0005509
Vvi17g0426 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Vvi17g0426 160 PANTHER CALCIUM BINDING PROTEIN 84 147 - -
Vvi17g0426 160 FunFam Probable calcium-binding protein CML16 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0426 Vvi-Chr17 4709595 4710077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0426 7 159 EF-hand Containing Proteins AT1G18530 77.778 6.61e-88 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0426 K13448 - vvi:100247540 296.204