Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0424 ATGGACGCCGACGAAGAAGATTACGTGTTCTACGGCACGCCGATTGAGCGTGAGGAAGAGATGACCAGTCGTAAGAAGAAAGCTGTTGCTGAGTCTTCTGGTCTCTTGCGAAGCCTCCCTCCCTGGAAGCAAGAGGTTACAGATGAAGAAGGCCGAAGGCGGTTTCATGGAGCATTTACGGGAGGGTTTTCTGCTGGTTTCTACAATACTGTGGGCTCTAAAGAGGGTTGGGCTCCCCAGTCATTTACATCATCACGGAAGAACCGGGCTGAAGTTAAAAAACAGAGTATTTTTAGTTTCTTAGATGATGATGAGATAGCGGAAATGGAAGGCCATTCCCTGGGGACATCTTTGCAGTTTGATACATTTGGATTCACAGCTGCAGAACTTGCTCGAAAACAAGCTGAGAAGGAACAACAGCAAAGGCCATCAGCTATTCCTGGACCTCTTCCTGACGAAATAGTTCTTCTGGCAACAGAATCTATTGGTGTCAAATTGCTGCTGAAGATGGGATGGCGACGTGGTAACTCAATCAAAGATTCACATACTAATTCACTGTATGATGCTCGTCGAGAAGCTAGAAAAGCTTTTCTAGCACTTTCTTCTGATGATGTGAGCACAGACCTTGCTGTCTCTGAGGGTGTTAAGAGTGACCTTCAAAATGCCATTGAGCTGCCTGCGAATGATGATCTTAAGTCTTCTGAAAGTACCCCAGTTTATGTACTCAATCCAAAGCAGGACTTGCATGGTTTAGGTTATGATCCTTTCAAGCATGCTCCAGAGTTTAGGGAAAAGAAGAGACTACGCATGTCTGGGAAAAAAGAGCTGGGGTTGAAAAATGATCTCTTTGCTTTCAAGTCAAGAAAGGTTGCTCCTGGTTTTGGTATTGGAGCACTTGAAGAACTTGATGTTGAAGATGAGGATGTCTATGCTTCTGGTTATGACTTTGAAGATAATTATATTCAAGAAGTTGAAGAGCCTTCAGGTTTGGTCATTGAAAGTAAGCAAAAGTTGGGAAGCAAGGAAAAGGGTGTTCTCTCTGGTTTTAAAGTTGCATCAAAGCTTGACTATCAGTTGGAGAGATTCGATCCTCCAGTTGTTCCAAAGAATTTTGTACCCCACCACAAATTTCATGCTCCTCTCGATGACAGTAACAAGCATGATGGTGATCCCCCTCCCCCAGAGGCTATTGCTCCTGAGGATAATAATCTGAAACTCTTGATTGAGGGGGTTGCAACTTTGGTAGCTAGGTGTGGTAAATTATTTGAGGATCTCTCCAGAGAGAAGAATCAGTCAAACCCATTGTTTTCTTTTCTTACTGGAGGAAATGGCTGTGATTATTATGCAAGAAAGCTGTGGGAGGAGCGACAGAAGCATAATGACAAAAGCAAGCAGCTATTGGATGTGAAATCATCTCCTACCGTGCAGAAGATGACAGCAGAGAGTCGTGGAAAAATTCTAGGAGAAAGGCCTCTAGAAAGAAGCTCCAGAGATACAAACTCATCTGTTGCTTCTGCAGATGTCATTCAACTGCAATTCAATCTGTCAGATACATTTACAAAACCTGCATCACTTAAAGAGTTGTCAGAAATTGCAAAACCTTTCAAAGAGGATCCTGCAAAGCAAGAAAGGTTTGAGCTGTTCCTCAAGGAAAAGTACCATGGAGGGCTTCGCTCTACAGATTCTGGTGGAGCTAGTAATATGTCAGAAGCTGCTCGTGCTCGTGAGAAATTGGATTTTGAGGCAGCAGCTGAGACAATAGAGAAAGGGTTGCGGGGCAAGGAAAGTAATCTTTCTACCCAACAGTTTATGGAGATGTCAGCAACTGCAGTAATGGAGTTTGCTCCTGGAGGACTAGAGCAAGCTAAGGTTACTCAAGCTGAAGAACTGGTAATAAAAAAGATGTATCCAAAACGGGAAGAGTTTCAGTGGCGACCTTCACCTATTTTGTGCAAGCGCTTTGATATCATTGATCCATTTATGGGGAAGCCACCGCCAGCTCCAAGAAGGAGAAGCAAGATGGATTCTCTTGTCTTCACATCAGACTCTGTGAAATCCACAACTGTTGATGAAACTGTTACTTCAAAATTGCCCGTAGCTCAATTAGATCCTCAACAGTTCAGCACAGATGTAAATGCCAGGGAAATTGAAGTCAACATGGAAGTTGAAAAAGTTGAAAGGCCAGTTGACCTGTACAAGGCCATTTTCTCTGATGATTCAGATGATGAAGTAGAGAATTCTACTAGTAATCAGGTGGATGATCCAAAAAGAAAAATTGAAGCAGCTAATACAACACTAAACCGTTTGATGGCTGGCGACTTTTTAGAATCCTTGGGTAAAGAACTAGGCCTGGAGGTTCCCCCTGATATGCCTCAGTCCATAAACAAAGCCAGAACCTCCGCTCCTAAGAAGGAAAGTAATGATGTTAATCCAGGAAATATTAGCTCCCTGGCAGTTGAAAATAAGCCTTCTTCTACCTATACTGCTGTTAAAGGTACTTCTGTAAATCAGGAGGCGCCGCATGACAAAGCATATGACCAGGAGTCTACACAAGAGGTTCGATCCCAAAATAATGAACTTATGCTTGATAGCCCAAGTGGTAGCAAAATAAAGGTCACTGGTTCCTCTGAGAATGAATCTAGTAAAATCAAAGCAGAGAAGATGGATCAAGAGGGTAGGAAAGCCAAGACACCCACTGGCCACCGCCAAAATTGGAGCAGTGATTCGTCATCAGAGGATGAAAGGAGTAGAAAACGTTCGAGGCGACGTCGGCATAGAAGTGATAGTTCAGACACTGATATATCGAGCGACCATCAAGATCGTTATCACTCAAGGTCAAAAGGGAGAAAGAAAGGTTCCTCTCGAGAAAAGAGTAGCAGCAGCAGAAGATACTCAAAGCACCATAAACGTGGAAGCAGAGACTCTCCCAGCAGATCTTCTCGTCACAGCAGTGAGAGAGAACGTTCAGAGAGCAAGAGAGAGAAACGGAGATGA 2994 0.4359 MDADEEDYVFYGTPIEREEEMTSRKKKAVAESSGLLRSLPPWKQEVTDEEGRRRFHGAFTGGFSAGFYNTVGSKEGWAPQSFTSSRKNRAEVKKQSIFSFLDDDEIAEMEGHSLGTSLQFDTFGFTAAELARKQAEKEQQQRPSAIPGPLPDEIVLLATESIGVKLLLKMGWRRGNSIKDSHTNSLYDARREARKAFLALSSDDVSTDLAVSEGVKSDLQNAIELPANDDLKSSESTPVYVLNPKQDLHGLGYDPFKHAPEFREKKRLRMSGKKELGLKNDLFAFKSRKVAPGFGIGALEELDVEDEDVYASGYDFEDNYIQEVEEPSGLVIESKQKLGSKEKGVLSGFKVASKLDYQLERFDPPVVPKNFVPHHKFHAPLDDSNKHDGDPPPPEAIAPEDNNLKLLIEGVATLVARCGKLFEDLSREKNQSNPLFSFLTGGNGCDYYARKLWEERQKHNDKSKQLLDVKSSPTVQKMTAESRGKILGERPLERSSRDTNSSVASADVIQLQFNLSDTFTKPASLKELSEIAKPFKEDPAKQERFELFLKEKYHGGLRSTDSGGASNMSEAARAREKLDFEAAAETIEKGLRGKESNLSTQQFMEMSATAVMEFAPGGLEQAKVTQAEELVIKKMYPKREEFQWRPSPILCKRFDIIDPFMGKPPPAPRRRSKMDSLVFTSDSVKSTTVDETVTSKLPVAQLDPQQFSTDVNAREIEVNMEVEKVERPVDLYKAIFSDDSDDEVENSTSNQVDDPKRKIEAANTTLNRLMAGDFLESLGKELGLEVPPDMPQSINKARTSAPKKESNDVNPGNISSLAVENKPSSTYTAVKGTSVNQEAPHDKAYDQESTQEVRSQNNELMLDSPSGSKIKVTGSSENESSKIKAEKMDQEGRKAKTPTGHRQNWSSDSSSEDERSRKRSRRRRHRSDSSDTDISSDHQDRYHSRSKGRKKGSSREKSSSSRRYSKHHKRGSRDSPSRSSRHSSERERSESKREKRR* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0424 997 Gene3D Surp module 381 462 IPR035967 GO:0003723|GO:0006396
Vvi17g0424 997 MobiDBLite consensus disorder prediction 926 943 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 377 394 - -
Vvi17g0424 997 Pfam Surp module 407 454 IPR000061 GO:0003723|GO:0006396
Vvi17g0424 997 Pfam Protein of unknown function (DUF1604) 39 113 IPR011666 GO:0006397
Vvi17g0424 997 SMART surpneu2 405 457 IPR000061 GO:0003723|GO:0006396
Vvi17g0424 997 MobiDBLite consensus disorder prediction 880 898 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 783 997 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 961 975 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 850 879 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 793 835 - -
Vvi17g0424 997 ProSiteProfiles SURP motif repeat profile. 407 449 IPR000061 GO:0003723|GO:0006396
Vvi17g0424 997 MobiDBLite consensus disorder prediction 459 501 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 976 997 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 377 398 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 131 150 - -
Vvi17g0424 997 SUPERFAMILY Surp module (SWAP domain) 390 456 IPR035967 GO:0003723|GO:0006396
Vvi17g0424 997 FunFam G patch domain-containing protein TGH 370 461 - -
Vvi17g0424 997 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 995 - -
Vvi17g0424 997 MobiDBLite consensus disorder prediction 736 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0424 Vvi-Chr17 4682297 4698137 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0424 K13123 - vvi:100242404 1803.49