Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0418 ATGACACTCACATTGATCAATCTGGCAGTGTCGGGGAATGCTCAAGCCCTCCAAGTGGACCAATGGACAGTGGATGCTGCTCTAGGAAATCCCCAAGCTGATGGGAAACTCCCAACCCGTGTTGACGAAAAACTTGCAAAGAGTTTTATGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCAGTTTTAACTTCAAGAACTGAAGTTGCACCTAGAAGCAACGTCAAGAAACGGGAGCAGATTGGTTCTGTGGGTGAGCTTGCTTTCTCCAGCACCGCCATAGCCATCTCTCTCTCCGGCGTCAGTGGCTTTAATCTTCCTCTAGACTGGGTGCTACTGGAAGCACTCGAGCATCAGAATGCCCAGCTCCACGCCGCTGTTTCTATCGTAAGAGTGGCAACTGCCATCGCCGCAATAGCAGTCGCCACAGCTGCCTCCTCCGGAGCCGGAAGGGACAGGCAGATGGTGAAGATCGTCACGGCGGTCACCTCTGCCTCCACTCTCGTCGCCGCCCAGTGCATGGAGCCCGGCAGTATCATGACCTCGATGGCCGCCGCAGCCACATTGAAGGCAAGGGTTCGACTTTTGAGGCTGTCCGTGGTCTTGCTGTGGCAATGGTAG 621 0.5427 MTLTLINLAVSGNAQALQVDQWTVDAALGNPQADGKLPTRVDEKLAKSFMEEIACGAYHVAVLTSRTEVAPRSNVKKREQIGSVGELAFSSTAIAISLSGVSGFNLPLDWVLLEALEHQNAQLHAAVSIVRVATAIAAIAVATAASSGAGRDRQMVKIVTAVTSASTLVAAQCMEPGSIMTSMAAAATLKARVRLLRLSVVLLWQW* 207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0418 206 Pfam Auxin canalisation 118 179 IPR008546 -
Vvi17g0418 206 PANTHER EXPRESSED PROTEIN 116 175 IPR040269 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi17g0418 Vvi-Chr17 4603272 4604083 Transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0418 - - vvi:100248282 81.2629