Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0417 ATGATTATGAAGTTGGGTCTTCTGCTGATCATCTCCTTTCTATGCCTAACAGCTAAAGCATCATCACCACCAGATGAATATATGGTAAAGCCAAATTGTCGGTATCGATGCGGAAACGTTACCATTCCCTTCCCATTTGGGATCGGGGACAGCTGTTATCTGAACGTGTGGTACTCAGTAAACTGCAGCGTTAATATGTCTTCTGGTGCTGAAAAGCCCTTTCTAAACCATACTAAACTCAACCTGGAGCTGCTGAATGTATCACTGGAACACCGAACGGTGGAAGTTAATAGTCCCATAGCTTCCTATGATCAGCGGCAGGGGGAGAGCAACACGTCTCAGCCAAGTATTGATCTGGACAAAAGCCCGTTCCTGTTCTCGAGGCTCGATAATATATTCGTGGTGTTGGGTTGTGGCCAAGCAAAACTCATGGATCATGAGAATGTCTGGGCAGACTGCACCTCCATTTGCAATAATAGTTATCCTGCTCAAGGCCGCAATGGCTTCAACTTTTGCCAAACCCCAATTCTATCCACAGATAGCTACTATCGCAATAACTACCTTGTGGGTTTTACCCGAGGCTGTGAAGGAAACAACTACTCTAACTCCACTACCCATGCCTTCTTGGTGGATAGACACTGGTTTTCTCACAACTCCACAAAACCTGAGGATATTACAAGAGTGAAGTATGCTCCGTTATCATTGTTGTGGAAGACAAAAAGTGGGGACAACGCCAGCTCTGACTGTAACCGCATCGCGTACTACAACCCGATGATGGGATTATATGTTCATTATTCTTGCAGCTGCCCATTGCGTCACGAAGGCAACCCTTATCTTCCCAAGGGATGTGATCATGGTATGCACTTCTTTCTTGATCGGCTGTAA 885 0.4565 MIMKLGLLLIISFLCLTAKASSPPDEYMVKPNCRYRCGNVTIPFPFGIGDSCYLNVWYSVNCSVNMSSGAEKPFLNHTKLNLELLNVSLEHRTVEVNSPIASYDQRQGESNTSQPSIDLDKSPFLFSRLDNIFVVLGCGQAKLMDHENVWADCTSICNNSYPAQGRNGFNFCQTPILSTDSYYRNNYLVGFTRGCEGNNYSNSTTHAFLVDRHWFSHNSTKPEDITRVKYAPLSLLWKTKSGDNASSDCNRIAYYNPMMGLYVHYSCSCPLRHEGNPYLPKGCDHGMHFFLDRL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0417 294 Pfam Wall-associated receptor kinase galacturonan-binding 33 97 IPR025287 GO:0030247
Vvi17g0417 294 PANTHER OSJNBA0016N04.9 PROTEIN 6 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0417 Vvi-Chr17 4601342 4602226 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0417 8 283 Receptor kinase-like Gene Family AT1G16110 28.349 1.32e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0417 - - vvi:100259516 364.385