Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0409 ATGCAATCCAACGAACCAGCCACTTCCATGGAGGTTGAAAATGTTTTATCGGAACCAAATCCCACATCTGGGACTTTTCCATCAAAGCCAAAGTTTGAGCCTCTAAAGGCTCATGAGATGTCTGAAGGCCGAGTTCAGTTTCGGAAGGTCTCCGTTCCACCCCATCGATATACTCCTCTGAAGAAAGCATGGATGGAAATCTATACTCCAATATATGAGCAGATGAAAATAGACATTCGAATGAATCTCAAAGCTCGCAAAGTTGAATTGAAAACCAGGGCAGACACTCCTGACATTAGCAACTTGCAGAAGTGCACTGATTTTGTCCATGCTTTTATGCTAGGGTTTGGTGTGGTAGATGCCATTGCCCTCTTGCGTCTGGATGAGCTTTACGTAGAATCTTTTGAGATCAAAGATGTTAAAACTCTTCGAGGTGAGCACCTGTCTCGTGCCATAGGAAGACTGTCTGGTAAAGGAGGCAAAACAAAGTTTGCAATTGAGAATGCTACAAGGACGAGGATTGTAATTGCGGACACCAAGATTCACATATTAGGATCTTTTTCCAACATTAAAATTGCAAGAGATTCTCTTTGTAGCCTCATTTTAGGGTCCCCTGCTGGAAAGGTATATTCAAAACTCAGAGCAGTTACTGCTAGACTTGCTGAGAGGTTTTGA 675 0.4267 MQSNEPATSMEVENVLSEPNPTSGTFPSKPKFEPLKAHEMSEGRVQFRKVSVPPHRYTPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCTDFVHAFMLGFGVVDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATRTRIVIADTKIHILGSFSNIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0409 224 SMART kh_6 129 202 IPR004087 GO:0003676
Vvi17g0409 224 Gene3D K Homology domain, type 1 128 224 IPR036612 GO:0003723
Vvi17g0409 224 FunFam RNA-binding protein PNO1 128 224 - -
Vvi17g0409 224 CDD KH-I_PNO1_rpt1 45 124 - -
Vvi17g0409 224 PANTHER RIBONUCLEASE Y 4 223 - -
Vvi17g0409 224 MobiDBLite consensus disorder prediction 1 27 - -
Vvi17g0409 224 CDD KH-I_PNO1_rpt2 126 221 - -
Vvi17g0409 224 MobiDBLite consensus disorder prediction 1 32 - -
Vvi17g0409 224 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 129 223 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0409 Vvi-Chr17 4541967 4542641 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0409 K11884 - vvi:100254291 442.58