Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0407 ATGCAATCCAACGAACCAGCCACTTCCATGGAGGTTGAAAATGTTTTATCGGAACCAAATCCCACATCTGGGACTTTTCCATCAAAGCCAAAGTTTGAGCCTCTAAAGGCTCATGAGATGTCTGAAGGCCGAATGAAAATAGACATTCGAATGAATCTCAAAGCTCGCAAAGTTGAATTGAAAACCAGGGCAGACACTCCTGACATTAGCAACTTGCAGAAGTGCACTGATTTTGTCCATGCTTTTATGCTAGGGTTTGGTGTGGTAGATGCCATTGCCCTCTTGCGTCTGGATGAGCTTTACGTAGAATCTTTTGAGATCAAAGATGTTAAAACTCTTCGAGGTGAGCACCTGTCTCGTGCCATAGGAAGACTGTCTGGTAAAGGAGGCAAAACAAAGTTTGCAATTGAGAATGCTACAAGGACGAGGATTGTAATTGCGGACACCAAGATTCACATATTAGGATCTTTTTCCAACATTAAAATTGCAAGAGATTCTCTTTGTAGCCTCATTTTAGGGTCCCCTGCTGGAAAGGTATATTCAAAACTCAGAGCAGTTACTGCTAGACTTGCAGAAAGGTTTTGA 585 0.4222 MQSNEPATSMEVENVLSEPNPTSGTFPSKPKFEPLKAHEMSEGRMKIDIRMNLKARKVELKTRADTPDISNLQKCTDFVHAFMLGFGVVDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATRTRIVIADTKIHILGSFSNIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0407 194 Gene3D K Homology domain, type 1 98 194 IPR036612 GO:0003723
Vvi17g0407 194 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 99 193 IPR036612 GO:0003723
Vvi17g0407 194 SMART kh_6 99 172 IPR004087 GO:0003676
Vvi17g0407 194 CDD KH-I_PNO1_rpt2 96 191 - -
Vvi17g0407 194 MobiDBLite consensus disorder prediction 1 27 - -
Vvi17g0407 194 MobiDBLite consensus disorder prediction 1 32 - -
Vvi17g0407 194 FunFam RNA-binding protein PNO1 98 194 - -
Vvi17g0407 194 PANTHER RIBONUCLEASE Y 44 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0407 Vvi-Chr17 4526141 4526815 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0407 K11884 - vvi:100254291 362.844