Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0405 ATGTCGGAAGAGGCTGAGAAAAGGCTTCAGTCAGTCATGGCCAAGCTCTTCCATCCCCCCAAGTCCAAACCCAACTCTCCCAGTGATAGTTCATCCGATGGTCAATCGTCAAAAGGCAAAAAGCGCCCAAATCCAATGTCTGCATCCGCAATTGAATCAAAATTAAGAAAGGATATTCAAAAGTCAACTACTCCAGTGCAGGCTCCATTGTGCAGGCCATGGGATCGAGAAGATCTCATGAAGAGATTAGCTACATTCAAATCTATGACTTGGTTTGCTAAACCTAAGGTGATAAGTGCTATAAATTGTGCCAGAAGAGGCTGGGTGAATGTGGAAATGGACATCATAGCCTGTGAAGCCTGTGGAGCACGTCTTCTCTTTTCTACTCCATCATCTTGGACACAGCAGCAAGTTGAGAAGGCAGCCTTGGTATTCAGCTTAAAGCTGGATAATGGACACAAACTACTTTGCCCGTGGATGGACAATGCCTGCGATGAGATGCTAGCACAGTTTCCACCTGCAACAGTTCAAGATTTAGTGGATGGTTACAAAGAACGATCTTCTGCTCTTTTGCAACTTGTAGCCCTTCCCTTGATTTCATCTGCAGCCATTAATTACATGAGAAGTCCTCAGCTGGAGCATTTTCTTAGACAATCTGCAGTGTTGGAATTTGGCAGTGTGTCTGCAGATTCTTCTCAGACAGAATATCTTGGAAGTGAATGTGATGCAGTTTCTGCTAATTTGTATTTTCAGGCACAAAAGCTCATAAGTTTATGTGGTTGGAAGCCTCGCTCGCTGCCTTATGTGGTTGACTCCAAGGATCGGCAATGTAAATCTGCTAAAGATGTCAATCATTTGGATCTGTCTCGTATAGTTGCTAATATGCAGACTCCTCCAATTAGCGTCCACTCTTCTGCCACTGATAAGAGTATGCAAGCAAATGAAGATCCCATGGCATCTAGTGAACTACAGTCTGAGCATTCTGTTGTTCTAGAATGCAGCCTTTGTGGAGCCACCGTTGGATTATGGGCTTTCTCTACAGTTCAACGTCCAACAGAGTTTTTTAGATTAGTTGGAAATTCAGAAGTTACTGGTGAAAGCAATGCTTTTCATTGTAAAGGAACTGTCTTTTGCCCTGTCAGTGGTGCTCCTGGAATTCAGGATTCAGGAAAAGAAAACCATGTCAACCGTACTGAAGCTGTCATGATCACTGATGCAAATGGTGCTAGATCATCAAATGAAAGATTGTTGAATTTAAATTTGACAATTGCAGGGGGTCCTCCACCAACAGAGCAAAACTTCAGAGCAACAATTTCCATACCTGTTATAGGTCAGAATTTAAGGGCACGGTTTTCTTCTGATCATGATTTTAGGGATCGTAGCTGTGTTAATCAAGAAAATAGTCCATCTGGTGCCAATAAAAAGGGTTTATTTCTGGAGGGAAAAAACCACACAGAAAACACAGTCACTCCACAAATTGCCCATCCAGAATCTATTGTCCTCCTAGAAAGCAAAAGACATGGTGATGGACAATTTAATGCTACAAGCAATGATCAATCTCCATGTTTGAATAACAACATCAGTGAGGAAGATGATGCATTTAGAAACAGTAACAATCACATGTCATTGGAAAGACCAAATGTCAATCAGCAGGGACTGGGTTTTCCTGAAACTGGTATGCATGATTCTATTTTCAAAGTTCAAACGCAAGATGTAGTACAAAGTTCTGGTCAAAATAGCAAGTTGGCTGAGAGTGCAGATAATGTCAGGACAGTTAACCCAACAGTAACTGAGAGTGTAGATAATGTCGGGACAGTTAACCCAACAGCAACTGAGAGTGTAGATAATGTCGGGACAGTTAACCCAACAGCAACTGAGAGTGTAGATAATGTCGGGACAGTTGACCCAACAGCAACTGAGAGTGTAGATAATGTCGGGACAGTTGACCCAACAGCAACTGAGAGTGTAGATAATGTCGGGACAGTTAACCCAACAGCAACTGAGAGTGCAGATAATGTTGGGGCAGTTAACCCAACAACAACTGGGAGTGCAGATAATGTTGGAGCAGTTAACCCAGCAGCAACTGAGAGTGCAGATAATGAAGTTAGAGATTCTTGCATGACAAGTGCAGATGCTAATATGACAACTAGAAATGCAGAAATCAGTGAGGATGATTCATTAATGGTGGTTGGGGCTGATGATTGCAATCTTCAGCAGATTCATGGAACTGATAGTGCCTGTAACATACACATAAGAGGAGGAGCCAAATATTCTGAGGTCCAAAACATTTTAAGCACTCAACCAAATAGCCAGGGTGACGATTGGGTCAAAGACAGAGGACAGATTCCTGTAAATAACGAAGCTGTAGCCTGTGGCATAGCAAATGATCTGAAGCAACAACCAATAGATAAAGCCATGGAGTTTGATCCAATCTGGCAGCACAGACACTTTTGCCCATGGATTGCAGCAGCAGGCGGTGCTGCACCTGGATGGCAACAAACTCTCTCTGCTTTACAACAGCAGAAAGATTTTTCTCATCCTTCACCCTCGAACATGATCAAGGTGGATGATCCCATTGCTTCAGTTAGAAAGATTTTCATGTCGTCATCAGAAAAAAGAATGAAGCGCACTCATGGATCGACCTAA 2646 0.4271 MSEEAEKRLQSVMAKLFHPPKSKPNSPSDSSSDGQSSKGKKRPNPMSASAIESKLRKDIQKSTTPVQAPLCRPWDREDLMKRLATFKSMTWFAKPKVISAINCARRGWVNVEMDIIACEACGARLLFSTPSSWTQQQVEKAALVFSLKLDNGHKLLCPWMDNACDEMLAQFPPATVQDLVDGYKERSSALLQLVALPLISSAAINYMRSPQLEHFLRQSAVLEFGSVSADSSQTEYLGSECDAVSANLYFQAQKLISLCGWKPRSLPYVVDSKDRQCKSAKDVNHLDLSRIVANMQTPPISVHSSATDKSMQANEDPMASSELQSEHSVVLECSLCGATVGLWAFSTVQRPTEFFRLVGNSEVTGESNAFHCKGTVFCPVSGAPGIQDSGKENHVNRTEAVMITDANGARSSNERLLNLNLTIAGGPPPTEQNFRATISIPVIGQNLRARFSSDHDFRDRSCVNQENSPSGANKKGLFLEGKNHTENTVTPQIAHPESIVLLESKRHGDGQFNATSNDQSPCLNNNISEEDDAFRNSNNHMSLERPNVNQQGLGFPETGMHDSIFKVQTQDVVQSSGQNSKLAESADNVRTVNPTVTESVDNVGTVNPTATESVDNVGTVNPTATESVDNVGTVDPTATESVDNVGTVDPTATESVDNVGTVNPTATESADNVGAVNPTTTGSADNVGAVNPAATESADNEVRDSCMTSADANMTTRNAEISEDDSLMVVGADDCNLQQIHGTDSACNIHIRGGAKYSEVQNILSTQPNSQGDDWVKDRGQIPVNNEAVACGIANDLKQQPIDKAMEFDPIWQHRHFCPWIAAAGGAAPGWQQTLSALQQQKDFSHPSPSNMIKVDDPIASVRKIFMSSSEKRMKRTHGST* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0405 881 Pfam C3HC zinc finger-like 73 195 IPR012935 GO:0008270
Vvi17g0405 881 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 877 - -
Vvi17g0405 881 MobiDBLite consensus disorder prediction 599 690 - -
Vvi17g0405 881 MobiDBLite consensus disorder prediction 1 67 - -
Vvi17g0405 881 MobiDBLite consensus disorder prediction 23 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0405 Vvi-Chr17 4510979 4521022 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0405 - - vvi:100259364 1733.38