Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0404 ATGTATGGTTTCGCGTTTTATCTTTCTTATCCACAATCTCTCTCTGGGCAAGGAGAGGCTTCGCTTTGTAAGTCAAAAGAAGAAAGGCTTTTGTATGAGGACTCGGGAGGAACGACTCCTCACATAAAAATGTTGCCAAATTCCAAAATTCTGCAGTTCCTTCGCTCTCCACCACCAGCCCTTCCTCCTCTGCCACAAGCCCCCAACAACATACCCACTTCTCCATCTCCTCCCATCCTCAAACAACAATGCAAATTCTCCCGCCGAGACTTCACAATTTGCAGCAACTCTTCCTTGCTTCTTCTCCTGGGCTCTGCACTTGTGGAATCCAGGGCACGGGCTGAAGAAGGTTCTGCAGTTGATGCCGATAAAACTGATGGACTACAAGAGAACGCTCCTCCAAATTGCACTGCTAAAGCTCCAACTAAGCGAGCATTCCTTGATATATCAATTGATGGGGAGCCGGCAGGAAGAATAGTTATAGGCCTATATGGAGATGATGCACCAGCTGGAGCTGCTAGATTCAGTGGCCTAGTTAGTGGGGCTGCTGGCATTAGCTATAGAAGAAAGGAGTTTGTGAAGATCATGCCAAACTATGTACAACATGGTGGGGTGAGGTCTTATGGCGTGGATGCCGAGCTTGCAAAGCGAACGGGAAGCAATTTGGCAGCTGAGAGTCTGGTAACAGAATGGGAGAAAATGAATGAGAAGTGCCCAGGAACAAAGAATTTGGCAGGGAGTGTGGGCATTGTTGTGAGGGATCCAACCAAACCCCCACCTAAAATAAAGCTGGTTGCGAGGGGAGGGAAGTTGGAGATTGATGAAGAGGATGTCGGAGCGGACCCCAATGGAACAGAGTTTGTGATTACCAGCAAGGATTCGCCCGAATTAGATACCTCAACTTTGGTAATTGGAAGAGTATTGGAAGGTATGGAAGTTGTGGAGAAAATTGGGCAGGTGAAGACTGTGCAAGAGAACACTGGTTCTCCTTATTTCAGGGTTGCCAAGTTGATCGGAGATAAAAGAGCAACGGTTGCAGAAAGAGGCTTCAACCGCCCTTATTCCAAGGTGCTCATCACAAATTGTGGCTTGATCCAATAG 1101 0.475 MYGFAFYLSYPQSLSGQGEASLCKSKEERLLYEDSGGTTPHIKMLPNSKILQFLRSPPPALPPLPQAPNNIPTSPSPPILKQQCKFSRRDFTICSNSSLLLLLGSALVESRARAEEGSAVDADKTDGLQENAPPNCTAKAPTKRAFLDISIDGEPAGRIVIGLYGDDAPAGAARFSGLVSGAAGISYRRKEFVKIMPNYVQHGGVRSYGVDAELAKRTGSNLAAESLVTEWEKMNEKCPGTKNLAGSVGIVVRDPTKPPPKIKLVARGGKLEIDEEDVGADPNGTEFVITSKDSPELDTSTLVIGRVLEGMEVVEKIGQVKTVQENTGSPYFRVAKLIGDKRATVAERGFNRPYSKVLITNCGLIQ* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0404 366 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 147 325 IPR002130 GO:0000413|GO:0003755
Vvi17g0404 366 MobiDBLite consensus disorder prediction 56 79 - -
Vvi17g0404 366 MobiDBLite consensus disorder prediction 117 139 - -
Vvi17g0404 366 Gene3D - 135 366 IPR029000 -
Vvi17g0404 366 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 53 366 IPR044185 -
Vvi17g0404 366 FunFam Peptidyl-prolyl cis-trans isomerase B 135 366 - -
Vvi17g0404 366 SUPERFAMILY Cyclophilin-like 141 365 IPR029000 -
Vvi17g0404 366 MobiDBLite consensus disorder prediction 56 75 - -
Vvi17g0404 366 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 146 364 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0404 Vvi-Chr17 4509162 4510618 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0404 K03768 - vvi:100254249 605.905