Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0402 ATGCATGTTTCCTATAAACCTAACCTTTGTATCTCTATTTCTTACAACTTGTATTGCACTTTCGGACAGGAACCAATGGACTGGAGTGTAAATAATGCATTTAAAACATATAAAGATGCAGAACCCAAATCAGTAATGGATATGGCTCTCATTCCAAACATTGACCCAAGAGATATTGGATTGGGTTCTTCAGAAAAGGGCAATGTTGGTCCTGCAGCAAAACCAAGAAAGAAGACAATGACATCAGTTTATCTCAAGTTTTTTGAGACAGCTCCTGATGGGAAAAGTCGTAGGTGTAAATTTTGTGGACAGAGCTATTCTATTGCAACTGCCACTGGCAATTTGGGAAGGCACCTGAGCAACCGCCACCCAGGATACGATAAGTCCGGGGATGCTGTCACCAGTTCGGCCCCACAGCCTATCACAATAGTCAAGAAACCTCAAACTCAAGTGAAATCACCACAAGTGGATTTCGATCATTTGAACTGGTTGCTAATAAAGTGGCTCATTTTGGCCTCACTCCCTCCTTCAACCTTGGAGGAAAAGTGGCTTGCAAACTCCTTTAAATTTCTCAATCCGTCAATTCAACTCTGGCCAGGTGAAAAGTATAAAGCCGTATTCCGTGAAGTTTTCAGAAGCATGAGAGAAGATGTAAGGGCATCTTTGGAACAGGTTTCATCAAAAGTATCGATCACAGTTGATTTCTGGACATCCTATGAACAGATTTTTTATATGAGTGTTACATGTCATTGGATTGATGAAAACTGGTGCTTTCAAAAGGTTCTTCTTGATATTTGTCACATACCTTACCCTTGTGGAAGCAATGAGATCTATCACTCACTGATAAAGGTTCTCAAGATGTACAATATTGAAAGCAAAGTCCTATCCTGCACCCATGATAACAGTCAGACTGCCATGCATGCATGCCATTCCTTAAAAGAGGATTTGGATGGTCAGAAAGTGGGACCCTTCTGCTACCTCCCTTGTGCTGCTCGCACTTTGAACATGATCATAGATGATGGATTAAGAACCACAAAGCCAGTAATCACTAAGATCCGGGAGTTTGTACTGGAGATGAACTCATCCTCAGAGATTTCTGAGGATTTTATTCAATTCACAACTGTTTATCAAGAAGGCAGTTGGAAGATTCCGCTTGATGCTTCAGCCCGGTGGAGCGGCAATTACCAGATGCTTGACATTGTGTGCAAGGCTGGCAAGTCCATGGATGCTGTCATCAGGAAGTATGAGGAGACCCTAAGCGGTAGGATGTTGCTCAACCCTGCAGAGAAGAATGCAGTTAACATTGTGTATGCGTATTTGGAAGCCTTCTACAAAATCACACTCAACATGATAAACAAGGTGCCAACAATTGGTCTGGTTCTTTTCTTCATGGATCACATTTCCGAAATGATTGCTGGTTGCAGAGAATCCCTTCGTAGTCCAGACTGGCTAAAGAATGCTGCTGAAGAAATGGCCAAAAAGACTCGCAGCTACAGCAATCAGGTATGCAATATATTTACATACATGACAGCAATTCTTGATCCCCGAATCAAAGCTGAGCTCATTCCAGAGAGCCTCAACTCGGAAACCAATCTAGAGGAAGCAAGAACCCATTTCATGAGAAATTATTCAACAAACCATTTCCCATCCATTGCCAGTGGATATAGTGCTCAAGAGATTGAGGATGGGGCGAGTGTTTCTTTTGCTGAGGAAATTGCTAGAAAGAAACGAAGGGTGAGCATGAGCACCGCCACTGACGAGCTCACCCAGTACCTGTCAGAGCCACCTGCTCCAATACCAACAGATGTTTTGGAGTGGTGGAAGGTGAACACTACACGTTATCCACGGCTATCTACAATGGCCCGTGATTTCTTGGCTGTTCAGGCAACTTCTGTGGCACCTGAAGAAGTGTTTTGTGGCAAAGGAGATGAGATGGATAAACAACGGTTCTCAATGCCACATGATAGCACACAAGCTCTCCTATGTATTAGGTCATGGACGCATGGTGGAATCAAATTGAAGTATAAATCAACCGAGATAGACTATGAAAGCCTGATGGAATTAGCGACGGCTGCAGCAGATAATGGCACTGCAGGCTTCGACAAGAAACAAAAATGA 2118 0.4311 MHVSYKPNLCISISYNLYCTFGQEPMDWSVNNAFKTYKDAEPKSVMDMALIPNIDPRDIGLGSSEKGNVGPAAKPRKKTMTSVYLKFFETAPDGKSRRCKFCGQSYSIATATGNLGRHLSNRHPGYDKSGDAVTSSAPQPITIVKKPQTQVKSPQVDFDHLNWLLIKWLILASLPPSTLEEKWLANSFKFLNPSIQLWPGEKYKAVFREVFRSMREDVRASLEQVSSKVSITVDFWTSYEQIFYMSVTCHWIDENWCFQKVLLDICHIPYPCGSNEIYHSLIKVLKMYNIESKVLSCTHDNSQTAMHACHSLKEDLDGQKVGPFCYLPCAARTLNMIIDDGLRTTKPVITKIREFVLEMNSSSEISEDFIQFTTVYQEGSWKIPLDASARWSGNYQMLDIVCKAGKSMDAVIRKYEETLSGRMLLNPAEKNAVNIVYAYLEAFYKITLNMINKVPTIGLVLFFMDHISEMIAGCRESLRSPDWLKNAAEEMAKKTRSYSNQVCNIFTYMTAILDPRIKAELIPESLNSETNLEEARTHFMRNYSTNHFPSIASGYSAQEIEDGASVSFAEEIARKKRRVSMSTATDELTQYLSEPPAPIPTDVLEWWKVNTTRYPRLSTMARDFLAVQATSVAPEEVFCGKGDEMDKQRFSMPHDSTQALLCIRSWTHGGIKLKYKSTEIDYESLMELATAAADNGTAGFDKKQK* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0402 705 Pfam Domain of unknown function (DUF4413) 452 530 IPR025525 GO:0003677
Vvi17g0402 705 Pfam BED zinc finger 82 124 IPR003656 GO:0003677
Vvi17g0402 705 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 34 663 - -
Vvi17g0402 705 SMART bed5 79 126 - -
Vvi17g0402 705 Pfam hAT family C-terminal dimerisation region 587 666 IPR008906 GO:0046983
Vvi17g0402 705 SUPERFAMILY Ribonuclease H-like 215 667 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0402 Vvi-Chr17 4494070 4499252 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0402 - - vvi:104882334 1384.78