Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0398 ATGGCTGACCGCCACTCCGGTTCAGGCCAAACCCAACGTCCACCTCGACCCACACCCGGTTCAGCATTCCTACGTAGACTCCACGACCACGCCCCCAACTCCACTCAATTCATCGGCTTCTTGGCCCTCATCGTCTCCGGCTGCATCTTGCTCTTCCTCACCGGCCTCACCATCACCGCCACTGTCATTGGCCTCATCTTCTTCACCCCCTTGATCCTCCTTTCCAGCCCCATATGGGTTCCGGCCGGGACAGTTCTCTTCTTAGCTGCGGCTGGGTTCTTATCCATGTGCGGGTTCGGTCTGGCGGTTCTGGCCGGTCTGTCTTGGATATACAAGTACTTCAGGGGTTGGAACCCGCCCGGTTCTGGCAGGTTTGACTACGCCAGGAGCCGGATCGCGGACACGGCCAGCCACGTAAAGGACTACGCTAGGGAGTATGGTGGGTATTTGCAGAGTAAGGTGAAGGACGCGGCTCCTGGAGCCTGA 486 0.5905 MADRHSGSGQTQRPPRPTPGSAFLRRLHDHAPNSTQFIGFLALIVSGCILLFLTGLTITATVIGLIFFTPLILLSSPIWVPAGTVLFLAAAGFLSMCGFGLAVLAGLSWIYKYFRGWNPPGSGRFDYARSRIADTASHVKDYAREYGGYLQSKVKDAAPGA* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0398 161 Pfam Oleosin 35 147 IPR000136 GO:0012511|GO:0016020
Vvi17g0398 161 PANTHER OLEOSIN 30 156 IPR000136 GO:0012511|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0398 Vvi-Chr17 4476885 4477370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0398 1 161 Lipid Metabolism Gene Families AT3G18570 50.877 1.70e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0398 - - vvi:100244020 330.872