Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0396 | ATGGCGAAGCCTCGCAAGCCGAAGACCGACGACAACACGAAGCCCGAGAATTCCAATTCTCGAGCCGTGGTTCGTCACCAAAAGCTCTGCCTTTCTATCGATATCGACAAGCGGCGGATTTACGGTTACACCGAGTTGGAAATTGCTGTTCCGGATATTGGGATTGTTGGGTTACATGCTGAAAATTTAGTGATCGAGAGTGTGTCTGTTGATGGAGAGCCTACTGAATTTGAATTTTACCCACATCATCAACATACTGAAAGTGAGAAAAGATGGAGCTCGGTCTTATCGGCTAGTTCAGCTGCTGACGTTGCAAGTTCGATGTATGTTTCAGCTCTTGAGAGAGAATTGGATCCAAACTTACTGATCATGTGTTGTAAACCTGAAAAGTCAGCCAGTGAACAGCAAGGTCAACAGAGTTTGGAGAATGGGTTGCATTCCTCTGGTGAACCCAAGCAGAATGTGAAATTGGTTCGTGTTGACTATTGGGTGGAGAGGGCAGAGACAGGGATTCATTTTGAGGATAATGTGCTACACACTGATAACCAGATTAGGCGTGCACGCTGTTGGTTCCCTTGTATGGATGATACTTCACAGTGTTGCTGCTATGATCTGGAATTTACAGTGGCCCATAATCTTGTGGCTGTCAGCACTGGAAGCTTACTTTATCAGGTGTTAAGCAAAGATGACCCTCCTAGAAAAACATATGTCTATAAGTTAAATGTTCCAGTTACTGCAAGGTGGATACAATTGGCAGTTGCACCCTTTGAAGTACTTCCTGACCGCCATAGTGGTCTTCTTTCATACCTGTGTTTGCCAGCTAATTTACCCAAGCTTTGGAATACTGTGGGTTTCTTCCATAGTGCATTTAGCCATTATGAGGATTATCTTTCTGCATCATTTCCATTTGGATCATACAAGCAAGTCTTTATTGCTCCTGAAATGGCAATATCCTCATTGACATTGGGAGCCTCCATGAGCATCTTTAGTTCTCAAATTCTATTTGATGAGAAGGTTATTGATCAGACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATGAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAGGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTATATGGAAAAATAAGATCATGGAAGTCTGTTGCAATCCTTCAAATGTTGGAAAAACAGATGGGCCCCGAGTCCTTCCGTAAGATTTTGCAGACTATAGTTTTTCGGGCTCAAGATACAACTCGTTCTTTGAGAACTCTTAGTACGAAGGAGTTCCGACATTTTGCCAATAAGGTTGGAAATCTTGAGCGCCCATTTCTTAAAGAATTTTTTCCTCGCTGGGTAGGATCTTGTGGGTGTCCTGTACTAAGGGCGGGTTTATCCTATAACAAGCGAAAAAATTTGGTTGAACTGGCGGTATTACGGGGATGCACTGCCGCACCAGATACAAATACAATGGTTCTTAATGGCAATATTGATTCTGAAAATCGAGAAGTTGATATTGGATGGCCAGGAATGATGAGCATCAGGGTTCATGAGCTTGATGGTATGTATGACCATCCAATTTTGCCAATGGCTGGAGAAACTTGGCAACTTCTTGAAATTCAGTGCCATTCAAAACTTGCTGCTAGACGCTTCCAGAAGCCTAAAAAGGGGTCAAAACCTGATGGCTCCGATGATAATGGTGATGTACCTGCTGTGGATATGCGCTCCAACACCGAATCCCCTTTGTTATGGCTTAGGGTAGACCCTGAACTGGAGTATCTTGCTGAAATTCATTTTAATCAACCTGCACAGATGTGGATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTCTGAATAATTTCCTCAGCGATTCGAAGGCCTTTTGGAGAGTCCGAATTGAGGCAGCATTTGCATTGGCTAATACAGCATCCGAGGAAACTGATTGGGCTGGTTTACTACATCTGGTTAAATTTTATAAAAGTCGGAGATTCGATGCAAACATTGGACTCCCCAAGCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAGGCCATTCCGCATGCAATAGCTATGGTTAGAGCCGCAGATAAGAAAAGCCCAAGAGAAGCTGTTGAGTTTGTTTTACAACTTCTGAAGTATAACGATAATAATGGGAATCCTTACTCTGATGTATTCTGGCTTGCTGCACTAGTGCAGTCAGTTGGGGAACTTGAATTTGGGCAACAGAGTATTCTCTTTTTATCATCTCTTCTCAAGCGCATCGATCGGCTTTTGCAATTTGACAGGCTGATGCCAAGTTACAATGGGATATTGACAATCAGCTGCATCCGAACCTTGACACAGATTGGGTTGAAGCTTTCTGGATTTATCCCTCTTGATCGTGTCATTGAACTTGTTAAACCATTTCGGGACTTCCAGGCAATATGGCAAGTCCGAATTGAAGCAAGCAGAGCACTCCTAGGTCTAGAATTCCATTTCAAGGGCATTGATGCAGCATTATCCTTATTCATTAAATATGTAGAGGAAGAACCATCCATAAGAGGACAAGTAAAGCTTGGAGTGCATGCCATGCGGTTATGTCAGATAAAAGGTGGATCTGAATCTGACAATGACATAAAGAGTTCAACTCTTGTGGCATTGCTTCGTCTACTTGAAAGCCGTATAGCATTCAACAATGTCTTCCTTCGGCACCACTTGTTCTGCATTTTACGAATCCTTGCTGGAAGGCTCCCAACACTTTATGGAGTTCCAAGAGATCAAATCCCGCAAATGGACCCTGCAGAGATCTGTAGTGAACAGAAGAATGGTTTTATCACTATCGTTAAGGAGACTAAGTCCCTGGAGCCTCCCGTGGACACCCCAAATGTCTCTCATGATGGTTTGGCCCTTCCAGAAGCTTCTAGGGAAGCTGATACTGTTTCCAACAGCCATGAACGGAAAATGCCAGTAGTCAAGATCAGGGTTAGACAATCTGCTGCATCCAGTAGAGCAGAGGAGGCTGATAATCCAACTGTTGATAAATCTCAAGGTGGCCATAATGAAATAGATCGTGGTGGCAGCAGTTCCATATCTGTCGATGCACCACAAAGGAATTTCACTGAAGCTGTAAGCATCAGCAATCAAAATCTTGAGGAAGTCAACTCATGTCATGATCGTGGCTCTCAGATGACTGCTAGCATTGGCAGTGCCAAACTAGCAAGTGATGGTGATGAAGTGGGAAAGGAGCTCCAGTGCACTGCTGATTCAGGCAAAATCTCGGTGCTCCCCCCGTCAGACGAGGGTCCATTGTTCAGTGGCATCCAAGACATCCAAGGAGGCAGCATCCAAGACAACATTGTAGATGTCGATGCACAAAAATATGCGAGTCTTCAAACCCTCTCAGTCATGAGACATGAAGTTGAAGGTGGTACGGTGGCAGCAGTAAAACCTCAGTCGCATGGGAAAGCAAAAGAGAAGAAGGAGAAAGAGAAAAAAAGGAAGCGGGAAGATCCAGAGTATCTGGAACGGAAGCGGTTGAAAAAGGAGAAGAAACAGAAGGAAAAAGAGATGGCTCAACTACTGAGTGGTGAGGCAAAGCAGAAGGAAAAGGAGATGTCAGAGCTGCTGAGCGGTGAGGCGAAGCAGAAGGAAAAGGAGATGACAGAGCTGCTGAGTGGTGATGCAAAGGCATCATCAGTCGAGCTTGGGGTTAAGAAAGTTGAATCTGGAATTAAGTTGGCAACTGTACAATATAAAGCGAGCGAATCCAGTGTATCGAAAATAGTGACGACGAAGGTGGAGGCATCAGAAGGTAGTTCTGCTCCAAAATTTCGAATTAAAATTAAAAATCGATCAAAGTGA | 4080 | 0.437 | MAKPRKPKTDDNTKPENSNSRAVVRHQKLCLSIDIDKRRIYGYTELEIAVPDIGIVGLHAENLVIESVSVDGEPTEFEFYPHHQHTESEKRWSSVLSASSAADVASSMYVSALERELDPNLLIMCCKPEKSASEQQGQQSLENGLHSSGEPKQNVKLVRVDYWVERAETGIHFEDNVLHTDNQIRRARCWFPCMDDTSQCCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVYKLNVPVTARWIQLAVAPFEVLPDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLSASFPFGSYKQVFIAPEMAISSLTLGASMSIFSSQILFDEKVIDQTIDTRIKLAYALARQWFGVFISPEAPNDEWLLDGLAGFLTDSFVKRFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCTAAPDTNTMVLNGNIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCHSKLAARRFQKPKKGSKPDGSDDNGDVPAVDMRSNTESPLLWLRVDPELEYLAEIHFNQPAQMWINQLERDKDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALANTASEETDWAGLLHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAIPHAIAMVRAADKKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIGLKLSGFIPLDRVIELVKPFRDFQAIWQVRIEASRALLGLEFHFKGIDAALSLFIKYVEEEPSIRGQVKLGVHAMRLCQIKGGSESDNDIKSSTLVALLRLLESRIAFNNVFLRHHLFCILRILAGRLPTLYGVPRDQIPQMDPAEICSEQKNGFITIVKETKSLEPPVDTPNVSHDGLALPEASREADTVSNSHERKMPVVKIRVRQSAASSRAEEADNPTVDKSQGGHNEIDRGGSSSISVDAPQRNFTEAVSISNQNLEEVNSCHDRGSQMTASIGSAKLASDGDEVGKELQCTADSGKISVLPPSDEGPLFSGIQDIQGGSIQDNIVDVDAQKYASLQTLSVMRHEVEGGTVAAVKPQSHGKAKEKKEKEKKRKREDPEYLERKRLKKEKKQKEKEMAQLLSGEAKQKEKEMSELLSGEAKQKEKEMTELLSGDAKASSVELGVKKVESGIKLATVQYKASESSVSKIVTTKVEASEGSSAPKFRIKIKNRSK* | 1360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0396 | 1359 | Gene3D | Neutral Protease Domain 2 | 262 | 512 | IPR027268 | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Vvi17g0396 | 1359 | Coils | Coil | 1247 | 1277 | - | - | |
| Vvi17g0396 | 1359 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID | 1 | 1259 | IPR037813 | GO:0005669 | |
| Vvi17g0396 | 1359 | SUPERFAMILY | Metalloproteases ("zincins"), catalytic domain | 267 | 517 | - | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 1217 | 1301 | - | - | |
| Vvi17g0396 | 1359 | SUPERFAMILY | ARM repeat | 663 | 977 | IPR016024 | - | |
| Vvi17g0396 | 1359 | CDD | M1_like_TAF2 | 26 | 508 | - | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 605 | 628 | - | - | |
| Vvi17g0396 | 1359 | SUPERFAMILY | Leukotriene A4 hydrolase N-terminal domain | 15 | 254 | IPR042097 | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 1338 | 1359 | - | - | |
| Vvi17g0396 | 1359 | Gene3D | - | 655 | 967 | IPR011989 | - | |
| Vvi17g0396 | 1359 | FunFam | Transcription initiation factor TFIID subunit | 261 | 512 | - | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 1225 | 1297 | - | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 1069 | 1107 | - | - | |
| Vvi17g0396 | 1359 | Pfam | Peptidase family M1 domain | 288 | 475 | IPR014782 | GO:0008237|GO:0008270 | |
| Vvi17g0396 | 1359 | Gene3D | tricorn interacting facor f3 domain | 22 | 253 | IPR042097 | - | |
| Vvi17g0396 | 1359 | MobiDBLite | consensus disorder prediction | 609 | 623 | - | - | |
| Vvi17g0396 | 1359 | FunFam | Transcription initiation factor TFIID subunit 2 | 125 | 253 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0396 | K03128 | - | vvi:100266355 | 2634.75 |