Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0393 ATGGATCAAGATTCTCAAGATCACAGCAAGCTCCCTGAGCTCAAACTAGATGCTAAGCAAGCTCAGGGGTTTCTCTCCTTCTTTAAAACCCTACCCCGGGACCCTCGAGCTGTTCGGTTCTTTGATCGCCGGGACTACTATACTGCTCATGGTGAGAATGCGACTTTCATTGCAAAGACATATTACCACACTACCACCGCTTTGCGACAACTGGGTAGTGGATCTGATGGCATTTCTAGTGTGAGTGTGAGCAAAAACATGTTTGAAACGATTGCTCGTAATCTTTTATTGGAGAGAACAGATCACACTCTTGAACTCTATGAGGGTAGTGGCTCAAACTGGAGACTGGTGAAAAGCGGGACCCCTGGAAATCTTGGAAGTTTTGAAGATGTTTTGTTTGCCAATAATGAGATGCAGGATTCTCCTGTGATTGTTGCACTTTTTCCAAACTTCCGTGAAAATGGATGCACTGTTGGGTTGGGCTTTGTTGACTTAACTAGGAGAGTCCTCGGATTGGCTGAATTTCTTGACGATAGTCAATTTACAAATGTGGAGTCAGCTTTGGTTGCCCTTGGTTGCAGGGAGTGCCTTCTGCCTTCAGAGAGTGCCAAATCCAGTGAAACTAGAACATTGCATGATGCATTGTCAAGATGTGGTGTGATGTTAACTGAAAGAAAGAGAACTGAGTTCAAGGCAAGGGATTTGGTGCAGGATCTTGGTAGGCTTGTCAAGGGTTCGATTGAACCAGTTCGTGATTTAGTTTCGGGTTTTGAACTTGCACCTGGAGCTTTGGGGTTATTACTGTCTTATGCAGAATTACTTGCAGATGAGAGCAATTATGGAAATTTTACCATCCAGAGATACAATCTTGACAGCTACATGAGATTGGATTCTGCTGCTGTAAGGGCATTGAATGTCCTGGAGAGCAAAACGGATGCAAACAAAAATTTTAGTCTATTTGGTCTCATGAACAGAACCTGTACTGCTGGGATGGGAAAGAGATTACTGCACATGTGGTTGAAACAGCCTTTAGTAGATGTAAATGAAATTAACTGCAGGCAGGATTTGGTGCAAGCATTTGTGGAAGATACTGCACTCCGCCAAGATCTGAGACAACATTTAAAAAGAATATCAGATATTGAGCGATTGTTGCGGACTCTCGAGAAGAGGAGAGCTAGTCTGCAGCATGTTGTAAAACTTTATCAGTCAAGTATTAGACTTCCATACATTAAAAGTGCCTTGGGACAGTATGATGGACAATTTTCATCACTAATCAAAGAGAAGTATTTGGATCCCCTTGAGTCCTGGACAGATGATGATCATTTAAATAGGTTCATTGGTCTTGTGGAAGCTGCCGTTGACCTTAATGAACTGGAGAATGGGGAATACATGATCTCATCTGGTTATGATGCAAAACTAGCTTCCCTGAAAAATGATCAAGAGACACTGGAGCTCCAAATACACAATCTACATAAACAAACTGCTATTGATCTTGATCTGCCTATGGATAAGTCTTTAAAGTTAGAGAAGGGCACGCAATTTGGGCATGTGTTTAGAATTACAAAGAAGGAAGAGCCAAAAATTCGGAAAAAGCTCACTGCCAAATTTATTGTCCTTGAAACCCGGAAAGATGGGGTAAAATTTACAAACACAAAGCTTAAAAAATTAGGGGATCAATACCAAAAGATACTTGACGAGTATAAGGATTGTCAAAGAGAGCTGGTTGTCCGAGTAGTTCAGACTGCAGCAACTTTCTCTGAGGTATTTATATTGTGTTATGTCTTGTTACTTCTTTCTGGCTTTTGCTCAAAATTGAAGGAAGTTTCAACTGTGCAGGTTTTCGAGAATTTAGCTCGCTTGCTTTCTGAACTTGATGTCTTACTTAGTTTTGCCGATTTGGCAACTAGTTCTCCTACTGCCTACACAAGACCTGAAATCTCTCCATCACACATGGGAGATATCATATTAGAAGGAAGTAGACACCCTTGTGTGGAGGCTCAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTGTCAGGGAAAAGAGTTGGTTCCAAATCATCACAGGGCCTAACATGGGTGGAAAATCTACATTCATTAGACAGGTTGGTGTGAACATCTTGATGGCACAAGTTGGCTCATTTGTTCCTTGTGACAAAGCCAATATTTCTGTTCGAGATTGTATTTTTGCTCGTGTGGGTGCTGGAGACTGCCAACTACGTGGCGTTTCTACCTTTATGCAAGAAATGCTTGAAACTGCATCAATATTGAAAGGTGCTACTGATAAGTCATTGATAATCATTGATGAATTGGGCCGTGGAACATCTACATATGATGGATTTGGTTTAGCTTGGGCTATATGCGAGCACATTGTTGAAGTGATTAAAGCACCTACTTTGTTTGCCACTCACTTTCATGAACTAACTGCATTAGCTCATGAAAATACTGATCATCAGCCTCCTGAAAAGCAAATTGTTGGTGTGGCCAATTACCATGTTAGTGCACACATTGACTCATCAAGTCGCAAGTTGACTATGCTTTACAAGGTTGAGCCAGGGGCTTGTGACCAAAGTTTTGGTATACATGTTGCAGAATTTGCAAACTTTCCTGAAAGTGTTGTCACTCTTGCGAGAGAAAAGGCTGCTGAGTTGGAAGATTTCTCACCTACTGAAATCGTTTCAAATGATGCTAGTGACAAGGGCTTAAAGGTGGGATCCAAACGAAAGAGAGAGAGTAGTCCTGATGACATTTCTAGAGGTGCTGCCCGGGCTCACCAGTTCTTGAAAGAGTTCTCTGATTTGCCATTAGAGAAAATGGACTTGAAGGAGGCTCTGCAACAAGTGAGCAAGTTGAAGAATGACTTGGAGAAGGATGCAGTGAACTGTCACTGGCTCCAGCAATTCTTCTAG 2913 0.4178 MDQDSQDHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSGTPGNLGSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQFTNVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLGRLVKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDSAAVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVNEINCRQDLVQAFVEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSSIRLPYIKSALGQYDGQFSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELENGEYMISSGYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRITKKEEPKIRKKLTAKFIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQTAATFSEVFILCYVLLLLSGFCSKLKEVSTVQVFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVEAQDWVNFIPNDCKLVREKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKGLKVGSKRKRESSPDDISRGAARAHQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQFF* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0393 970 MobiDBLite consensus disorder prediction 902 919 - -
Vvi17g0393 970 FunFam DNA mismatch repair protein 7 121 - -
Vvi17g0393 970 Coils Coil 553 573 - -
Vvi17g0393 970 PIRSF MSH2 6 598 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 PIRSF MSH2 604 970 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 SMART DNAend 314 667 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 SUPERFAMILY DNA repair protein MutS, domain III 297 636 IPR036187 -
Vvi17g0393 970 SMART mutATP5 684 883 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 Pfam MutS domain II 143 283 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 SUPERFAMILY DNA repair protein MutS, domain II 144 309 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 MobiDBLite consensus disorder prediction 899 920 - -
Vvi17g0393 970 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 65 888 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi17g0393 970 Coils Coil 370 397 - -
Vvi17g0393 970 FunFam DNA mismatch repair protein 294 511 - -
Vvi17g0393 970 FunFam DNA mismatch repair protein MSH2 642 966 - -
Vvi17g0393 970 ProSitePatterns DNA mismatch repair proteins mutS family signature. 765 781 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 Gene3D - 293 464 - -
Vvi17g0393 970 Coils Coil 939 962 - -
Vvi17g0393 970 Gene3D - 642 965 IPR027417 -
Vvi17g0393 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 887 IPR027417 -
Vvi17g0393 970 Gene3D - 467 550 - -
Vvi17g0393 970 Pfam MutS family domain IV 468 565 IPR007861 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 FunFam DNA mismatch repair protein 122 291 - -
Vvi17g0393 970 Coils Coil 473 493 - -
Vvi17g0393 970 Pfam MutS domain III 300 631 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 Pfam MutS domain V 687 886 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 Gene3D MutS, connector domain 122 291 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vvi17g0393 970 CDD ABC_MSH2_euk 655 886 IPR032642 GO:0005524
Vvi17g0393 970 Pfam MutS domain I 23 128 IPR007695 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0393 Vvi-Chr17 4309791 4334309 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0393 K08735 - vvi:100268052 1836.62