Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0388 ATGAGGGGATGTGACCAGAACCAGGATCTTCATGAAGGAATGATTCTGAATGAAACTTGTTATGTGAATTCTGAACATAACATGGTCTCGGAAACGCTACAAAATACTCGGCTGATGGATGGAAAGGCTGAAAACAATCTTCATGATCAAAATGATCAAATTCTACTGGAAGGCTTTAATGGACAGCATGAAAATGTGGGGTTGGATGGGATTAATGCTACTCCCTGTTCTGATGAAAATTGTCGGGAAGAAAATACATCAGGAACATCCAGTAGAGATATGGCAGACAATCTAAATGGAAGCATGCTACCAGATATTATATCTAAAAGAGTGAGGCAGCAGAAAGAAATGACTTTGGAAGATATGTATAATGACCAATATGATTATGATGATGACGATGATAGTGATTGGGAGCCCTTGCCGGGGCCTACAGCAGTCATAAGGTGGTTTTGTGTCAATTGTACGATGGCTAACCAAGACGATGTTGTACATTGTGATATATGTGGGGAACATAAAGAATCCGGAATCCTCAAGCATGGGTTTTTTGCATCACCTTTTTCACAAGAAGCAGGCCTTATTCATACTGATTCAGAAGTAGTAGAAAGATGCCAAGACTCACGCTCACCAAATCTCACCTCAAACAACTCCACTGCTGTGGGTTTTGATGAGAGAATGTTGCTGCACTCTGAAGTTGAAATGAAGTCACACCCACACCCAGAAAGGCCAGACCGTCTTCGAGCTATTGCTGCTAGCCTTGCTACTGCAGGTATATTTCCTGGAAAATGCTACCCAATTTTGGCAAGAGAGATTACTCGAGAAGAACTGCAGATGGTCCATTCTTTGGAGCATGTTGAAACTGTAGAACTTACAAGCCGTATTCTTTCGAGTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGACGTGCCAAAAATGGTTTTGCTTTGGTTCGCCCTCCTGGTCATCATGCTGGTGTTAGTCAGGCGATGGGGTTCTGCCTCCACAATAATGCGGCGGTTGCTGCACTAGCTTCACAGGTTTCAGGGGCTAAGAGGGTGCTAATTGTTGATTGGGATGTACATCACGGAAATGGCACACAAGAGATATTTGAGCAGAACAAATCGGTTTTGTATATATCCTTGCATAGACATGAAGGGGGAAACTTCTATCCTGGTACTGGGGCATCACACGAGGTGGGCAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGTGGAGGAGTTGGGGACAATGATTATATTTTTGCATTCCAGCATGTTGTGCTTCCTATAGCTTCTGAGTTTGCTCCTGATTTCACCATAATATCAGCAGGATTTGATGCTGCAAGGGGTGATCCCCTTGGTTGCTGTGATGTAACACCTGCTGGCTTTGCAAAGATGACAGATATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGGGTTCGTAGTTTACGTTTTGGCCATTGGTTTCACAACTAATTTTAATCTTTGCTTTTGA 1587 0.431 MRGCDQNQDLHEGMILNETCYVNSEHNMVSETLQNTRLMDGKAENNLHDQNDQILLEGFNGQHENVGLDGINATPCSDENCREENTSGTSSRDMADNLNGSMLPDIISKRVRQQKEMTLEDMYNDQYDYDDDDDSDWEPLPGPTAVIRWFCVNCTMANQDDVVHCDICGEHKESGILKHGFFASPFSQEAGLIHTDSEVVERCQDSRSPNLTSNNSTAVGFDERMLLHSEVEMKSHPHPERPDRLRAIAASLATAGIFPGKCYPILAREITREELQMVHSLEHVETVELTSRILSSYFTPDTYANEHSALAARLAAGLCADLASAIFSGRAKNGFALVRPPGHHAGVSQAMGFCLHNNAAVAALASQVSGAKRVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYPGTGASHEVGSMGAEGYCVNIPWSRGGVGDNDYIFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPAGFAKMTDMLNVLSGGKLLVILEGGFVVYVLAIGFTTNFNLCF* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0388 528 CDD HDAC_classII 238 517 - -
Vvi17g0388 528 Pfam Histone deacetylase domain 238 517 IPR023801 -
Vvi17g0388 528 SUPERFAMILY Arginase/deacetylase 214 523 IPR023696 -
Vvi17g0388 528 MobiDBLite consensus disorder prediction 78 97 - -
Vvi17g0388 528 PRINTS Histone deacetylase superfamily signature 340 363 IPR000286 -
Vvi17g0388 528 PRINTS Histone deacetylase superfamily signature 373 388 IPR000286 -
Vvi17g0388 528 PRINTS Histone deacetylase superfamily signature 461 471 IPR000286 -
Vvi17g0388 528 Gene3D Histone deacetylase domain 210 524 IPR037138 -
Vvi17g0388 528 PANTHER HISTONE DEACETYLASE 9-RELATED 130 511 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Vvi17g0388 528 ProSitePatterns Zinc finger RanBP2-type signature. 149 168 IPR001876 -
Vvi17g0388 528 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0388 Vvi-Chr17 4200396 4219255 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0388 - - vvi:100268092 1005.74